Homologs in group_873

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04430 FBDBKF_04430 87.9 Morganella morganii S1 sgrR HTH-type transcriptional regulator SgrR
EHELCC_05720 EHELCC_05720 87.9 Morganella morganii S2 sgrR HTH-type transcriptional regulator SgrR
NLDBIP_06040 NLDBIP_06040 87.9 Morganella morganii S4 sgrR HTH-type transcriptional regulator SgrR
LHKJJB_02920 LHKJJB_02920 87.9 Morganella morganii S3 sgrR HTH-type transcriptional regulator SgrR
HKOGLL_06395 HKOGLL_06395 87.9 Morganella morganii S5 sgrR HTH-type transcriptional regulator SgrR
PMI_RS10285 PMI_RS10285 58.7 Proteus mirabilis HI4320 sgrR HTH-type transcriptional regulator SgrR

Distribution of the homologs in the orthogroup group_873

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_873

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N125 0.0 809 68 1 554 3 sgrR HTH-type transcriptional regulator SgrR Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q66EM6 0.0 699 59 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pseudotuberculosis serotype I (strain IP32953)
A1JJG7 0.0 699 60 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A4TQA7 0.0 697 59 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis (strain Pestoides F)
Q1CMQ0 0.0 697 59 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis bv. Antiqua (strain Nepal516)
Q74Q56 0.0 697 59 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis
Q1C1Y8 0.0 697 59 1 554 3 sgrR HTH-type transcriptional regulator SgrR Yersinia pestis bv. Antiqua (strain Antiqua)
Q6D0F8 0.0 674 59 2 553 3 sgrR HTH-type transcriptional regulator SgrR Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P33595 0.0 622 53 3 553 1 sgrR HTH-type transcriptional regulator SgrR Escherichia coli (strain K12)
Q326G6 0.0 622 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella boydii serotype 4 (strain Sb227)
Q8XA02 0.0 621 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O157:H7
Q3Z5U2 0.0 620 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella sonnei (strain Ss046)
Q83SP3 0.0 619 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella flexneri
Q0T8C8 0.0 619 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella flexneri serotype 5b (strain 8401)
Q1RGC7 0.0 619 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli (strain UTI89 / UPEC)
Q8FL80 0.0 619 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A7B8 0.0 619 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O1:K1 / APEC
Q32K24 0.0 618 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Shigella dysenteriae serotype 1 (strain Sd197)
Q8Z9I4 0.0 618 53 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella typhi
Q5PDG5 0.0 618 53 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q0TLR9 0.0 618 53 3 553 3 sgrR HTH-type transcriptional regulator SgrR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q8ZRV0 0.0 617 53 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57TF2 0.0 613 53 2 553 3 sgrR HTH-type transcriptional regulator SgrR Salmonella choleraesuis (strain SC-B67)
P46890 3.52e-44 168 27 15 580 4 ybaE Uncharacterized protein YbaE Escherichia coli (strain K12)
O07570 9.03e-36 144 23 13 567 3 yhjP Uncharacterized protein YhjP Bacillus subtilis (strain 168)
P23847 1.52e-06 54 24 8 196 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
P33950 3.6e-06 53 25 7 191 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77348 0.000202 47 28 1 83 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)
P44572 0.000203 47 23 6 163 3 HI_0213 Putative binding protein HI_0213 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36634 0.000384 47 25 6 162 2 sapA Peptide transport periplasmic protein SapA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08875
Feature type CDS
Gene sgrR
Product HTH-type transcriptional regulator SgrR
Location 1840913 - 1842577 (strand: 1)
Length 1665 (nucleotides) / 554 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_873
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle
PF12793 Sugar transport-related sRNA regulator N-term

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4533 Transcription (K) K DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11925 SgrR family transcriptional regulator - -

Protein Sequence

MSTPRLQHQFIRLWQHHQGQSTDVTLQELAAILHCSRRHVRSLLNNMQSAGWLHWQAEAGRGKRSHLSFLQSGRELQHARAELLIEQDNIEKLVEMVNDKDAMRQMVLSQLERSFRQGKSLLRIVYYRPFYNLLPGSPLRRSEVHLLSQIFNGLTAINEENGEVIPALAHHWQQTGDKQWRFWLRPAVFFHHGRELQMVDIISSFERLRDRHPLFSHIRTVRSDSPHIIDITLSDEDQWFPVLTGSPHAAILPHEWQELPDFARHPVGTGPYQVVCNNDKKLTIRAFDHYYGYRALLDEVSVIVVPELEEKMICTTLHIGNDRTQSDSLDSRMEEGCYFLLHDKRSEKGKREDIRCWLNSLMTPVNLLYHCDPLYQRHWRPAYGLLLRWHHSKLIAPCEKPADLTELTLTYYHDHHEYHAIGKLLQKLLAEHGVTLHIVITDYDTWFHGNSDSDFWLATANFYKPLEFSIFATLYELPLLHRCLADDFRTPLKQWRQNTLSLAQWCEQMVDEQMLYPLFHHWLELQGQRSMRGVKMNTFGWFDFKSAWFIPPES

Flanking regions ( +/- flanking 50bp)

TAATATAAGGAAATATAAATGGATGAAAAAATCACCGGAGTTCCCCTTTTATGAGTACACCCCGCCTGCAACATCAATTCATCCGCCTGTGGCAGCACCATCAGGGACAAAGTACTGATGTCACCCTTCAGGAACTTGCCGCGATCCTGCACTGCTCACGCCGCCATGTCCGCTCACTGCTGAACAACATGCAGAGCGCAGGCTGGCTTCACTGGCAGGCGGAAGCCGGACGGGGTAAGCGCTCACATCTCAGTTTTCTGCAAAGTGGTCGTGAATTACAGCACGCGCGCGCCGAACTGTTGATTGAGCAGGATAATATCGAAAAACTGGTTGAGATGGTCAATGATAAGGATGCCATGCGCCAAATGGTGCTGTCCCAGTTGGAGCGCAGCTTCCGGCAGGGAAAAAGTCTGCTGCGCATTGTCTATTACCGGCCATTTTATAATTTACTGCCCGGTTCTCCGCTGCGTCGCTCGGAAGTGCATCTGCTCAGCCAGATTTTTAATGGTCTGACTGCAATAAATGAGGAAAACGGGGAAGTTATTCCTGCGCTGGCGCATCACTGGCAACAAACCGGCGATAAACAATGGCGTTTCTGGCTGCGCCCCGCCGTCTTTTTTCACCACGGGCGGGAATTGCAGATGGTGGATATTATCTCCTCCTTTGAACGCCTGCGTGACCGGCATCCGCTTTTCAGCCATATCCGGACTGTCCGCTCAGATAGCCCTCATATCATTGATATCACGCTGAGTGATGAAGATCAGTGGTTTCCGGTACTCACCGGCAGCCCGCATGCGGCTATCCTGCCGCATGAGTGGCAGGAACTGCCGGATTTTGCCCGTCATCCGGTTGGTACAGGACCCTATCAGGTCGTCTGTAACAATGACAAAAAACTGACTATCCGCGCCTTTGACCATTATTACGGCTACCGCGCGCTGCTGGATGAAGTGTCTGTTATCGTCGTACCGGAACTGGAAGAGAAAATGATCTGCACCACGCTGCACATCGGCAACGACAGAACGCAGAGTGATTCCCTCGACAGCCGCATGGAAGAGGGCTGTTACTTTCTCCTTCATGACAAACGTTCAGAGAAAGGAAAACGGGAAGATATCCGCTGCTGGCTCAACAGCCTGATGACACCCGTCAACCTGCTGTATCATTGCGACCCGCTCTATCAGCGCCACTGGCGACCGGCATACGGTCTGCTGCTGCGCTGGCATCACAGCAAACTGATCGCACCCTGTGAAAAGCCGGCAGATCTCACCGAACTGACACTGACCTATTATCACGATCACCATGAATACCATGCAATCGGCAAGTTACTGCAAAAGCTGCTGGCTGAGCACGGCGTTACACTGCACATTGTTATTACGGATTACGACACCTGGTTTCACGGTAACAGCGACAGTGATTTCTGGCTTGCCACCGCAAACTTCTATAAACCGCTGGAGTTTTCCATCTTTGCCACCCTGTATGAACTTCCTCTGCTGCACCGCTGCCTGGCAGATGATTTTCGCACGCCGCTGAAACAGTGGCGTCAGAACACGCTGTCACTGGCACAGTGGTGCGAACAGATGGTAGATGAACAGATGCTTTACCCGTTGTTCCATCACTGGCTGGAATTGCAGGGGCAACGCAGTATGCGCGGTGTCAAAATGAATACCTTCGGCTGGTTTGATTTTAAATCAGCCTGGTTTATCCCGCCGGAGAGTTAATTCACAGAAAAAGGCAAAGTTATAAACACCCTTCAACAAAAAAATGGCTT