Homologs in group_3842

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS08950 F4V73_RS08950 36.2 Morganella psychrotolerans - peptidoglycan recognition family protein

Distribution of the homologs in the orthogroup group_3842

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3842

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08505
Feature type CDS
Gene -
Product peptidoglycan recognition family protein
Location 1757171 - 1757779 (strand: 1)
Length 609 (nucleotides) / 202 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3842
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF01510 N-acetylmuramoyl-L-alanine amidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3023 Cell wall/membrane/envelope biogenesis (M) M N-acetyl-anhydromuramyl-L-alanine amidase AmpD

Protein Sequence

MLYIDDNGIVKSNRIKTKIFSHIERGRMDKVNGIVVHQTNTPAETHVFNSYSHAGSNGAHFLIDKDGVIYQTASLFKVTWHVGKMKSRCLIEKKCEPSELTKMANLELKGKTKEISDIEKIRPFPDRYPGNIDSIGIEIVGKAYGIKGKTVEEYENINPKQNASLRWLVSELIDSMDISASEVYRHPDVGRKNETEASTASW

Flanking regions ( +/- flanking 50bp)

TGGCGATATGATATAAGTTAGTAAGGTGCTTTACTATAGGATGGTTATATATGCTGTATATAGATGATAATGGAATCGTAAAATCAAATCGTATAAAAACCAAGATATTTAGCCATATTGAACGAGGAAGAATGGATAAGGTGAACGGCATTGTTGTTCACCAAACCAATACTCCCGCGGAGACTCATGTTTTTAACAGTTATAGTCACGCTGGTAGTAATGGCGCTCATTTTTTAATAGATAAAGATGGTGTTATTTATCAAACTGCCTCTTTGTTTAAGGTAACATGGCATGTAGGAAAAATGAAATCACGCTGTTTGATTGAAAAAAAATGTGAGCCTTCAGAGTTAACAAAAATGGCCAACCTTGAATTAAAAGGAAAAACCAAGGAAATTTCTGATATAGAAAAAATCAGACCATTTCCAGATCGTTATCCGGGTAACATTGATAGTATTGGTATCGAAATAGTCGGTAAAGCATACGGTATTAAAGGAAAAACTGTAGAAGAATATGAGAATATTAATCCAAAACAAAATGCATCCCTTAGATGGCTTGTGTCTGAATTAATAGATTCTATGGATATTTCAGCATCTGAGGTGTACAGACATCCTGACGTTGGCAGAAAAAATGAAACCGAAGCGAGCACCGCATCATGGTAAAGAAGAAATACATTTTAATATTTTTAATAGCTATAATACCTAATTTATTG