Homologs in group_2889

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11695 FBDBKF_11695 90.7 Morganella morganii S1 ygjV YgjV family protein
EHELCC_17615 EHELCC_17615 90.7 Morganella morganii S2 ygjV YgjV family protein
NLDBIP_19285 NLDBIP_19285 90.7 Morganella morganii S4 ygjV YgjV family protein
LHKJJB_18055 LHKJJB_18055 90.7 Morganella morganii S3 ygjV YgjV family protein
HKOGLL_19025 HKOGLL_19025 90.7 Morganella morganii S5 ygjV YgjV family protein

Distribution of the homologs in the orthogroup group_2889

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2889

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42603 1.55e-56 178 49 0 168 1 ygjV Inner membrane protein YgjV Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07995
Feature type CDS
Gene -
Product YgjV family protein
Location 1665581 - 1666099 (strand: -1)
Length 519 (nucleotides) / 172 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2889
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF10688 Bacterial inner membrane protein

Protein Sequence

MDYLYYAGQGFGIVAFFIGITVFIQRNERKLKIRLSIYTAIMATHFFLLGAYPAGISATLNSIRTYVSITHRQRWVLYLFVMLTLVLAVPNIRVWQEVLPVAGTLMSTFAFFLLAGIRMRYVLWCSTACWVVYNAWLGTVGGTLIESTFLLINGWAIYRFRKLIKQGINPFS

Flanking regions ( +/- flanking 50bp)

TTTATGCTGCCAATAAAACTATTCAGCAAAATTATCACGGCAGGGTACTGATGGATTATCTGTATTATGCGGGTCAGGGGTTCGGGATTGTCGCGTTTTTTATCGGGATAACGGTTTTTATCCAGCGCAACGAGCGGAAGCTCAAAATCCGCCTGTCCATTTACACCGCCATTATGGCCACTCACTTTTTTCTGCTCGGCGCTTATCCGGCAGGGATCAGTGCCACACTGAACAGCATCCGGACGTATGTTTCTATCACTCACCGCCAGCGTTGGGTGCTGTATCTGTTTGTCATGCTGACGCTGGTTCTGGCTGTTCCGAATATCCGTGTCTGGCAGGAAGTATTGCCGGTCGCGGGTACGTTGATGAGTACATTCGCTTTTTTCCTGCTGGCCGGGATCCGCATGCGCTATGTGCTCTGGTGCTCGACAGCCTGTTGGGTTGTCTATAATGCCTGGCTGGGAACCGTTGGCGGCACATTGATTGAATCCACTTTTTTACTGATAAACGGGTGGGCGATTTATCGCTTTCGAAAACTGATAAAGCAGGGCATAAATCCGTTCAGCTGAGAACAGGTCAGCGGGAGGGCGGGGTATTCTCCGGGGTATCTGAGTGTGAG