Homologs in group_2899

Help

5 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12575 FBDBKF_12575 91.5 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12580 FBDBKF_12580 42.7 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12590 FBDBKF_12590 44.2 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07815 F4V73_RS07815 41.9 Morganella psychrotolerans - radical SAM protein
F4V73_RS07825 F4V73_RS07825 42.8 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_2899

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2899

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q55914 1.54e-50 181 30 9 408 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KCU0 3.47e-49 177 29 10 398 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q8KBK9 1.37e-47 172 30 6 353 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
O58549 5.75e-27 115 25 13 417 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P42349 2.6e-19 94 24 9 359 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q7X2C7 4.35e-18 90 24 14 374 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
P26168 1.14e-17 89 24 12 361 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
B3QHD1 1.67e-17 88 21 8 352 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
Q9RFD3 2.87e-17 87 22 11 370 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
Q60AV6 2.8e-08 59 23 13 299 1 hpnR Hopanoid C-3 methylase Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q56184 2.81e-05 50 24 5 163 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
Q58882 5.2e-05 48 24 5 161 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07810
Feature type CDS
Gene -
Product radical SAM protein
Location 1629585 - 1630928 (strand: -1)
Length 1344 (nucleotides) / 447 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2899
Orthogroup size 6
N. genomes 2

Actions

Genomic region

Domains

PF04055 Radical SAM superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MKLILIKPNIGRREHSLYVDEGRMEPLMLGILAALTPPDVEVVLYDDRMESIPYDEPADLVAITVETFTARRAYEIAAQFRARGVRVVMGGIHATLLPEEVALYADSVFTGDAETRWAEMIGDARRGRLKPRYDAPAGVGQIDHNQCGCLPRRDIFKGKGYLPISLMQFTRGCRFACRFCAVSRYFGRQHYIRRIDEVVREIETQKPKFIFFVDDNIASDHGALSELCSALTPLNIHWISQASLDVTRNRPLMTRLQQSGCWGNVMGFESINPDSLRDARKSPNLREFSQYREEIAVLRDFGLQTWAAFTLGYDHDTAESVEQTTEFALKNRFAFAAYNILMPYPGTPLYQQLAQENRLLFDGKWWLHPEYRFNQAAFQPAQMSPETLTELCHNARSRFNSVPSIIRRFSDLRLTLQSLSRMATFWRYTLLFRKEVHKKHRMRFGLK

Flanking regions ( +/- flanking 50bp)

TCCCACCGGGAAATAGCCCGCAAACAAGGGAAACAGCCGGGGGGAAAAGCATGAAGCTGATACTGATCAAACCCAATATCGGACGGCGCGAACACAGTCTTTATGTTGATGAAGGGCGGATGGAGCCGCTGATGCTCGGCATTCTGGCCGCACTTACGCCACCGGATGTCGAGGTTGTGCTGTATGACGACCGCATGGAAAGCATTCCTTATGATGAACCCGCCGATCTGGTCGCTATCACTGTTGAAACCTTTACTGCCCGGCGCGCTTATGAAATAGCCGCGCAATTCCGCGCCCGTGGTGTGCGGGTGGTGATGGGCGGTATTCACGCCACACTGCTGCCGGAGGAAGTGGCACTGTATGCCGATAGCGTCTTTACCGGTGACGCGGAAACCCGCTGGGCAGAAATGATTGGCGATGCACGGAGAGGGCGGCTGAAGCCGCGCTATGATGCGCCTGCCGGTGTCGGACAAATCGATCACAATCAGTGTGGCTGTCTGCCCCGGCGTGATATTTTCAAAGGCAAAGGGTATCTCCCGATCAGCCTGATGCAGTTTACACGGGGTTGCCGGTTTGCCTGCCGTTTCTGTGCGGTCAGCCGCTATTTCGGACGGCAGCATTATATCCGCCGTATTGATGAAGTGGTGCGTGAGATTGAAACGCAGAAGCCAAAATTTATCTTTTTTGTCGATGACAATATCGCGTCTGATCATGGCGCGCTCAGTGAGTTATGCAGCGCGCTTACTCCCCTGAATATTCACTGGATAAGCCAGGCAAGCCTGGATGTCACCCGCAACCGTCCGCTGATGACCAGGCTACAGCAAAGTGGCTGCTGGGGGAATGTGATGGGATTTGAGTCCATTAACCCGGACAGTTTGCGAGATGCACGAAAATCGCCGAATTTACGCGAATTTTCGCAATATCGTGAAGAAATTGCCGTATTGCGTGATTTCGGGTTACAGACCTGGGCGGCGTTTACCCTCGGCTATGATCATGATACGGCTGAGAGTGTGGAACAAACGACAGAGTTTGCCCTGAAAAACCGTTTTGCGTTTGCTGCCTACAATATTCTGATGCCGTATCCCGGAACACCGCTTTATCAGCAACTTGCGCAGGAGAACCGCCTGTTGTTTGACGGGAAATGGTGGCTGCATCCGGAATACCGTTTTAATCAGGCGGCATTTCAGCCTGCGCAGATGAGCCCGGAAACCCTGACAGAACTGTGCCACAACGCCCGCAGCCGGTTTAATAGTGTGCCGTCGATTATCCGCCGCTTTTCTGATCTGCGTTTGACTCTGCAATCTCTTTCCCGCATGGCGACATTCTGGCGCTATACCTTATTGTTTCGCAAAGAAGTGCATAAGAAGCACCGGATGCGGTTCGGGCTGAAATAACAATAGAGGAAACGGCTGATGATCGGCGGATCTGACTCTTTCGCGCAGCG