Homologs in group_3746

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12540 FBDBKF_12540 86.6 Morganella morganii S1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Distribution of the homologs in the orthogroup group_3746

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3746

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0A1J1DL12 7.42e-10 56 34 4 116 1 MAG133 2-iminobutanoate/2-iminopropanoate deaminase Dermatophagoides farinae
Q8U308 1.75e-09 55 38 6 115 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P80601 1.86e-09 55 38 6 116 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Capra hircus
O58584 2.68e-09 54 37 6 115 1 PH0854 RutC family protein PH0854 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q3T114 3.93e-09 54 37 6 116 2 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Bos taurus
P52760 2.39e-08 52 36 6 116 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Mus musculus
Q10121 4.02e-08 52 34 4 115 3 C23G10.2 RutC family protein C23G10.2 Caenorhabditis elegans
Q9UZA3 5.95e-08 51 35 6 115 3 PYRAB12510 RutC family protein PYRAB12510 Pyrococcus abyssi (strain GE5 / Orsay)
P52759 2.45e-07 49 35 6 116 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Rattus norvegicus
Q973T6 3.11e-07 49 36 5 111 1 STK_08110 RutC family protein STK_08110 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
P52758 6.14e-07 48 33 6 116 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Homo sapiens
Q9UR06 4.02e-06 46 28 3 114 3 mmf2 Protein mmf2, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q97U19 4.8e-06 46 35 5 110 3 SSO3206 RutC family protein SSO3206 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
O52178 6.69e-06 45 32 3 115 3 dfrA Protein DfrA Myxococcus xanthus
O66689 1.63e-05 44 37 1 64 3 aq_364 RutC family protein aq_364 Aquifex aeolicus (strain VF5)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07775
Feature type CDS
Gene -
Product RidA family protein
Location 1622977 - 1623381 (strand: 1)
Length 405 (nucleotides) / 134 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3746
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF01042 Endoribonuclease L-PSP

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0251 Defense mechanisms (V) V Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09022 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Protein Sequence

MHKKLINPPDLFNSLQYGFSQAVETTGTRQLFLSGQVGVDHREITVPGGMREQTVQSVDNIARALAAAGGDLSHVVMLRIYIRAGADSHDEQMAIADVLKEKFGASAPASSWIIVSGLSLPEWLIEIEAQAVLP

Flanking regions ( +/- flanking 50bp)

CGGTATTTTCTCTTATTTAGCCAACAAAAAAATTCAGCAGAAAGGTCATTATGCATAAAAAACTCATTAATCCGCCCGACTTGTTTAATTCACTGCAATACGGGTTCAGCCAGGCGGTGGAAACCACCGGCACCCGTCAGTTGTTTCTGTCCGGTCAGGTCGGTGTTGATCACCGGGAAATCACCGTACCCGGCGGAATGCGGGAGCAAACGGTGCAATCTGTGGATAATATTGCCCGCGCACTTGCGGCTGCCGGCGGTGACCTCTCTCATGTGGTTATGCTGCGGATTTATATCCGTGCCGGGGCTGATTCACATGATGAACAAATGGCAATTGCGGATGTGCTGAAAGAAAAATTTGGTGCCTCAGCCCCGGCGTCATCCTGGATTATTGTCAGCGGATTGTCCCTGCCGGAATGGCTGATTGAGATAGAAGCGCAGGCGGTGCTGCCATAACCGGAAAGGCGCTGTACAGCGCCTGATTTGCATGATATTGATTACCTGAA