Homologs in group_1969

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14765 FBDBKF_14765 96.3 Morganella morganii S1 tmaR PTS system regulator TmaR
EHELCC_15570 EHELCC_15570 96.3 Morganella morganii S2 tmaR PTS system regulator TmaR
NLDBIP_16100 NLDBIP_16100 96.3 Morganella morganii S4 tmaR PTS system regulator TmaR
LHKJJB_15740 LHKJJB_15740 96.3 Morganella morganii S3 tmaR PTS system regulator TmaR
HKOGLL_14860 HKOGLL_14860 96.3 Morganella morganii S5 tmaR PTS system regulator TmaR
PMI_RS04175 PMI_RS04175 84.3 Proteus mirabilis HI4320 tmaR PTS system regulator TmaR

Distribution of the homologs in the orthogroup group_1969

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1969

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4ETB9 1.8e-61 186 85 0 107 3 PMI0851 UPF0265 protein PMI0851 Proteus mirabilis (strain HI4320)
Q1C9P9 2.84e-61 185 83 0 105 3 YPA_0855 UPF0265 protein YPA_0855 Yersinia pestis bv. Antiqua (strain Antiqua)
B1JPU8 2.84e-61 185 83 0 105 3 YPK_2514 UPF0265 protein YPK_2514 Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q1CGY2 2.84e-61 185 83 0 105 3 YPN_2420 UPF0265 protein YPN_2420 Yersinia pestis bv. Antiqua (strain Nepal516)
A7FJF8 2.84e-61 185 83 0 105 3 YpsIP31758_2417 UPF0265 protein YpsIP31758_2417 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B2JZP2 2.84e-61 185 83 0 105 3 YPTS_1683 UPF0265 protein YPTS_1683 Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q66C39 2.84e-61 185 83 0 105 3 YPTB1571 UPF0265 protein YPTB1571 Yersinia pseudotuberculosis serotype I (strain IP32953)
Q8ZFW5 2.84e-61 185 83 0 105 3 YPO1560 UPF0265 protein YPO1560/y2607/YP_1448 Yersinia pestis
A4TKJ3 2.84e-61 185 83 0 105 3 YPDSF_1416 UPF0265 protein YPDSF_1416 Yersinia pestis (strain Pestoides F)
A1JTU7 1.34e-60 183 83 0 105 3 YE2755 UPF0265 protein YE2755 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q7N376 1.17e-59 181 82 0 105 3 plu2843 UPF0265 protein plu2843 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q6D434 1.19e-59 181 83 0 105 3 ECA2560 UPF0265 protein ECA2560 Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C6DF99 2.24e-59 180 82 0 105 3 PC1_1767 UPF0265 protein PC1_1767 Pectobacterium carotovorum subsp. carotovorum (strain PC1)
A8GGR6 2.76e-59 180 81 0 105 3 Spro_3208 UPF0265 protein Spro_3208 Serratia proteamaculans (strain 568)
C5BD23 8.62e-55 169 78 0 103 3 NT01EI_1321 UPF0265 protein NT01EI_1321 Edwardsiella ictaluri (strain 93-146)
P0A8M9 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Shigella flexneri
B2TYH5 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B1LP36 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli (strain SMS-3-5 / SECEC)
B6I833 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli (strain SE11)
P0A8M6 1.03e-54 168 78 0 103 1 yeeX UPF0265 protein YeeX Escherichia coli (strain K12)
B1IZQ6 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0A8M7 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TG79 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A8A1N0 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli O9:H4 (strain HS)
C4ZQR6 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli (strain K12 / MC4100 / BW2952)
B5YTE1 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli O157:H7 (strain EC4115 / EHEC)
P0A8M8 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli O157:H7
B7UT45 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZNH9 1.03e-54 168 78 0 103 3 yeeX UPF0265 protein YeeX Escherichia coli O139:H28 (strain E24377A / ETEC)
Q2NTW6 1.71e-54 168 81 0 100 3 SG1134 UPF0265 protein SG1134 Sodalis glossinidius (strain morsitans)
B7LTX6 7.81e-54 166 77 0 103 3 yeeX UPF0265 protein YeeX Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q8KR41 2.1e-53 165 77 0 103 3 yeeX UPF0265 protein YeeX Escherichia fergusonii
P67605 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67606 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella typhi
B4TMJ8 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella schwarzengrund (strain CVM19633)
B5BFD0 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella paratyphi A (strain AKU_12601)
C0Q1L6 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella paratyphi C (strain RKS4594)
A9MSK6 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PDQ9 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SX27 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella newport (strain SL254)
B4T911 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella heidelberg (strain SL476)
B5RBP9 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QZJ9 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella enteritidis PT4 (strain P125109)
B5FM27 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella dublin (strain CT_02021853)
Q57MT7 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella choleraesuis (strain SC-B67)
A9MLN4 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5EX25 4.62e-53 164 77 0 102 3 yeeX UPF0265 protein YeeX Salmonella agona (strain SL483)
B2VFM6 1.11e-52 163 78 1 105 3 ETA_13650 UPF0265 protein ETA_13650 Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
A4WC14 1.29e-52 163 77 0 102 3 Ent638_2575 UPF0265 protein Ent638_2575 Enterobacter sp. (strain 638)
A7MJN1 2.07e-52 162 76 1 105 3 ESA_01212 UPF0265 protein ESA_01212 Cronobacter sakazakii (strain ATCC BAA-894)
A6TBB2 5.48e-52 161 76 0 102 3 KPN78578_24220 UPF0265 protein KPN78578_24220 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XPI0 5.48e-52 161 76 0 102 3 KPK_1722 UPF0265 protein KPK_1722 Klebsiella pneumoniae (strain 342)
A4SHW1 8.18e-49 153 70 0 105 3 ASA_0299 UPF0265 protein ASA_0299 Aeromonas salmonicida (strain A449)
Q492K6 3.1e-44 142 73 0 99 3 BPEN_475 UPF0265 protein BPEN_475 Blochmanniella pennsylvanica (strain BPEN)
Q65S81 3.7e-42 137 66 0 100 3 MS1572 UPF0265 protein MS1572 Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q7VQX3 1.27e-40 133 70 0 95 3 Bfl460 UPF0265 protein Bfl460 Blochmanniella floridana
Q8K922 1.01e-38 128 63 0 99 3 BUsg_538 UPF0265 protein BUsg_538 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q7VLP5 1.44e-38 127 56 0 108 3 HD_1377 UPF0265 protein HD_1377 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
P57621 5.69e-38 126 65 0 97 3 BU556 UPF0265 protein BU556 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
B8D879 5.69e-38 126 65 0 97 3 BUAPTUC7_550 UPF0265 protein BUAPTUC7_550 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
B8D9X7 5.69e-38 126 65 0 97 3 BUAP5A_549 UPF0265 protein BUAP5A_549 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)
B8F426 8.1e-38 125 60 0 98 3 HAPS_0398 UPF0265 protein HAPS_0398 Glaesserella parasuis serovar 5 (strain SH0165)
B3GXE4 1.85e-37 125 58 0 100 3 APP7_0751 UPF0265 protein APP7_0751 Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3N073 1.85e-37 125 58 0 100 3 APL_0709 UPF0265 protein APL_0709 Actinobacillus pleuropneumoniae serotype 5b (strain L20)
B0BNZ0 1.85e-37 125 58 0 100 3 APJL_0708 UPF0265 protein APJL_0708 Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
A6VMU2 7.04e-37 124 61 1 103 3 Asuc_0921 UPF0265 protein Asuc_0921 Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q9CMI8 2.03e-36 122 55 0 107 3 PM0836 UPF0265 protein PM0836 Pasteurella multocida (strain Pm70)
A1SY66 1.09e-34 117 67 0 91 3 Ping_2721 UPF0265 protein Ping_2721 Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
A5UIT6 2.8e-34 117 56 0 99 3 CGSHiGG_09540 UPF0265 protein CGSHiGG_09540 Haemophilus influenzae (strain PittGG)
A5UCU0 2.8e-34 117 56 0 99 3 CGSHiEE_06200 UPF0265 protein CGSHiEE_06200 Haemophilus influenzae (strain PittEE)
P44117 2.8e-34 117 56 0 99 1 HI_1168 UPF0265 protein HI_1168 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4QLC9 3.76e-34 117 56 0 99 3 NTHI1336 UPF0265 protein NTHI1336 Haemophilus influenzae (strain 86-028NP)
Q6LQR1 4.86e-32 111 60 0 93 3 PBPRA1961 UPF0265 protein PBPRA1961 Photobacterium profundum (strain SS9)
Q8RG97 7.42e-31 108 66 0 89 3 FN0411 UPF0265 protein FN0411 Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q7MD09 8.63e-31 108 55 0 95 3 VVA1227 UPF0265 protein VVA1227 Vibrio vulnificus (strain YJ016)
Q8D5Z0 8.63e-31 108 55 0 95 3 VV2_0759 UPF0265 protein VV2_0759 Vibrio vulnificus (strain CMCP6)
B6ERM4 8.99e-31 107 51 0 95 3 VSAL_II0603 UPF0265 protein VSAL_II0603 Aliivibrio salmonicida (strain LFI1238)
Q87GT9 1.29e-30 107 56 0 95 3 VPA1226 UPF0265 protein VPA1226 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A5EZT0 1.56e-30 107 56 0 95 3 VC0395_0679 UPF0265 protein VC0395_0679/VC395_A0572 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9KLK2 1.56e-30 107 56 0 95 3 VC_A0741 UPF0265 protein VC_A0741 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
C3LW07 1.56e-30 107 56 0 95 3 VCM66_A0700 UPF0265 protein VCM66_A0700 Vibrio cholerae serotype O1 (strain M66-2)
Q5DZX0 2.11e-30 107 50 0 95 3 VF_A0606 UPF0265 protein VF_A0606 Aliivibrio fischeri (strain ATCC 700601 / ES114)
B5ETZ6 2.11e-30 107 50 0 95 3 VFMJ11_A0615 UPF0265 protein VFMJ11_A0615 Aliivibrio fischeri (strain MJ11)
A7N3Z2 3.31e-30 106 55 0 95 3 VIBHAR_05346 UPF0265 protein VIBHAR_05346 Vibrio campbellii (strain ATCC BAA-1116)
B7VQW7 3.91e-30 106 55 0 95 3 VS_II0351 UPF0265 protein VS_II0351 Vibrio atlanticus (strain LGP32)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07560
Feature type CDS
Gene tmaR
Product PTS system regulator TmaR
Location 1580005 - 1580331 (strand: -1)
Length 327 (nucleotides) / 108 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1969
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04363 Protein of unknown function (DUF496)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2926 Function unknown (S) S Uncharacterized conserved protein YeeX, DUF496 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09802 uncharacterized protein - -

Protein Sequence

MDNTTKPSFHNVLEFVRMFRRKNKILREITDNEKKIRDNQKRVLLLDNLSEYIKPGMSIDDIQAIIANMRGDYEDRVDEYIIKNADLSRERREISKELKAMGDIKDIK

Flanking regions ( +/- flanking 50bp)

ACCTGTATTGTTTAATGAATCACATTTCAGATATGACTAAGGGTAGAATAATGGACAACACAACCAAGCCTTCCTTTCACAATGTCCTGGAGTTCGTTCGTATGTTTCGCCGTAAAAATAAGATACTGCGTGAAATAACTGACAACGAAAAGAAAATCCGTGATAACCAGAAACGTGTGCTTCTGCTTGATAACCTGAGTGAATATATTAAGCCGGGAATGTCCATTGACGATATTCAGGCCATCATCGCAAATATGCGGGGTGACTATGAAGATCGTGTGGATGAGTACATTATTAAAAATGCTGATTTATCAAGAGAGCGTCGTGAAATCTCGAAAGAATTGAAAGCGATGGGCGATATTAAAGATATTAAGTAATCGCTCGATCCTGATAGTGGAAACCGTGAATAATGATATTCGCGGTTTTT