Homologs in group_62

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02505 FBDBKF_02505 57.6 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
FBDBKF_14585 FBDBKF_14585 89.5 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_02975 EHELCC_02975 57.6 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_15390 EHELCC_15390 89.5 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_00485 NLDBIP_00485 57.6 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_15920 NLDBIP_15920 89.5 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_01550 LHKJJB_01550 57.6 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_15920 LHKJJB_15920 89.5 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_01590 HKOGLL_01590 57.6 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_15040 HKOGLL_15040 89.5 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
F4V73_RS02440 F4V73_RS02440 57.6 Morganella psychrotolerans - cupin domain-containing protein
PMI_RS04340 PMI_RS04340 78.8 Proteus mirabilis HI4320 - cupin domain-containing protein

Distribution of the homologs in the orthogroup group_62

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_62

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P27431 0.0 523 65 0 372 1 roxA Ribosomal protein uL16 3-hydroxylase Escherichia coli (strain K12)
P44683 1.45e-44 161 32 11 344 1 HI_0396 Probable ribosomal oxygenase HI_0396 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A3KP59 1.89e-07 56 27 9 200 2 riox1 Ribosomal oxygenase 1 Danio rerio
A8QFQ3 3.8e-06 52 25 9 215 3 Bm1_53875 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Brugia malayi
Q16W06 2.82e-05 49 22 8 203 3 AAEL009382 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Aedes aegypti
B5DUH6 9.28e-05 48 32 3 83 3 GA27866 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila pseudoobscura pseudoobscura
Q5ZMM1 0.000107 47 25 8 207 2 RIOX1 Ribosomal oxygenase 1 Gallus gallus
B4GUZ2 0.000199 47 28 2 87 3 GL12933 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila persimilis
O01658 0.000285 46 28 7 123 3 jmjc-1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Caenorhabditis elegans
A8XEA2 0.0004 46 28 7 124 3 jmjc-1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Caenorhabditis briggsae
B0WMG3 0.000648 45 28 1 75 3 CPIJ008401 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Culex quinquefasciatus
Q9H6W3 0.00068 45 31 2 72 1 RIOX1 Ribosomal oxygenase 1 Homo sapiens
A5PK74 0.000713 45 31 2 72 2 RIOX1 Ribosomal oxygenase 1 Bos taurus
B3NU20 0.000816 45 33 2 83 3 GG18702 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila erecta

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07380
Feature type CDS
Gene -
Product cupin domain-containing protein
Location 1540104 - 1541225 (strand: 1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_62
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF08007 JmjC domain
PF20514 ROXA-like winged helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2850 Translation, ribosomal structure and biogenesis (J) J Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18850 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] - -

Protein Sequence

MDYELNLDWQSFMESHWQKRPLLIKGGFRDFRDTISPDELAGLAMEDDVSSRMVTRFDGKWDVRHGPFQDFDDLGEKDWSILVQAVNHWHFPSAALMKPFRCLSDWRADDLMISYSVPGGGVGPHLDQYDVFIIQGQGRRHWRVGEKIPMKQHCPHPDLLQVAPFDAIIDDEMVPGDILYIPPGFPHEGYAIEESLNYSVGFRAPNARELFSGFADYVIANDLGSYRYSDPDLSFRDNPALIQQGELTKLHRMMQDLLDQPAVFRQWFGEYISQSRHELDLAQPEPPYTPEDIQALMAQGESLFRLNGLRVLRVGDTCFVNGEELKTPHIEAADVLCQYDEVSADMLGDALHDPQFVILLTALINSGYWYFDD

Flanking regions ( +/- flanking 50bp)

GCAACATACTCCGTTATCTGGTTGTTTTTTTTCTCATTGAGGGCGTAACCATGGATTATGAACTGAATTTAGATTGGCAGTCCTTTATGGAAAGCCACTGGCAAAAACGCCCTTTACTGATCAAAGGTGGCTTCCGCGATTTCCGGGATACTATTTCACCGGATGAACTGGCGGGACTCGCGATGGAAGATGACGTCAGCAGCCGCATGGTTACCCGCTTCGATGGAAAATGGGATGTGCGCCACGGACCATTTCAGGATTTTGACGACTTAGGCGAAAAAGACTGGTCAATCCTGGTGCAGGCAGTCAATCACTGGCATTTCCCGTCCGCAGCCTTAATGAAACCTTTCCGCTGCCTGTCTGACTGGCGTGCCGATGACCTGATGATCTCTTATTCTGTGCCGGGCGGCGGTGTGGGTCCGCATCTTGATCAGTATGATGTTTTTATTATTCAGGGACAGGGTCGCCGCCACTGGCGTGTCGGGGAAAAAATCCCGATGAAACAACACTGTCCGCACCCGGATCTACTCCAGGTCGCCCCGTTTGATGCCATTATTGATGATGAAATGGTGCCGGGTGATATTCTTTATATTCCGCCGGGATTCCCGCATGAGGGCTATGCTATCGAAGAGTCACTGAACTATTCAGTCGGCTTCCGTGCCCCGAATGCCCGTGAATTATTCAGCGGTTTTGCTGATTATGTGATTGCTAACGATCTCGGCAGCTATCGCTACAGTGATCCGGATCTCTCCTTCCGTGATAATCCGGCGCTTATCCAGCAGGGTGAATTAACCAAACTTCACCGCATGATGCAGGATTTACTGGATCAACCCGCCGTATTCCGTCAGTGGTTCGGGGAATATATCTCTCAGTCCCGCCATGAGCTGGATCTGGCACAACCGGAGCCGCCGTACACGCCGGAAGATATTCAGGCACTGATGGCTCAGGGCGAATCCCTGTTCCGCCTTAACGGTCTGCGGGTTCTGCGCGTTGGTGACACTTGTTTTGTCAACGGCGAAGAGCTGAAAACACCGCATATTGAAGCCGCTGACGTGCTCTGCCAGTATGACGAAGTCTCAGCAGACATGCTGGGCGATGCCTTACATGACCCGCAGTTTGTTATTTTACTGACTGCGCTGATTAATAGCGGCTACTGGTATTTTGATGACTAACGATTAGTTATCATATAGTTAGTATAAACAACGCCACGACATCGTGGCGT