Homologs in group_509

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01040 FBDBKF_01040 87.4 Morganella morganii S1 bamB outer membrane protein assembly factor BamB
EHELCC_00505 EHELCC_00505 87.4 Morganella morganii S2 bamB outer membrane protein assembly factor BamB
NLDBIP_02955 NLDBIP_02955 87.4 Morganella morganii S4 bamB outer membrane protein assembly factor BamB
LHKJJB_04470 LHKJJB_04470 87.4 Morganella morganii S3 bamB outer membrane protein assembly factor BamB
HKOGLL_02575 HKOGLL_02575 87.4 Morganella morganii S5 bamB outer membrane protein assembly factor BamB
PMI_RS09090 PMI_RS09090 69.0 Proteus mirabilis HI4320 bamB outer membrane protein assembly factor BamB

Distribution of the homologs in the orthogroup group_509

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_509

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7CJM5 0.0 533 62 1 393 3 bamB Outer membrane protein assembly factor BamB Yersinia pestis
H9L451 7.04e-164 468 58 2 378 3 bamB Outer membrane protein assembly factor BamB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q32D50 3.4e-162 463 58 2 378 3 bamB Outer membrane protein assembly factor BamB Shigella dysenteriae serotype 1 (strain Sd197)
P77774 1.46e-161 461 58 2 378 1 bamB Outer membrane protein assembly factor BamB Escherichia coli (strain K12)
F7XXL0 1.55e-123 365 47 2 372 3 bamB Outer membrane protein assembly factor BamB Moranella endobia (strain PCIT)
Q5E769 3.11e-119 354 42 2 387 3 bamB Outer membrane protein assembly factor BamB Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q9KTW8 1.33e-107 324 40 2 387 3 bamB Outer membrane protein assembly factor BamB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8EC35 3.66e-98 300 39 2 384 3 bamB Outer membrane protein assembly factor BamB Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
F5ZAY7 4.44e-85 268 35 3 371 3 bamB Outer membrane protein assembly factor BamB Alteromonas naphthalenivorans
C7R5S3 7.1e-78 248 35 3 381 3 bamB Outer membrane protein assembly factor BamB Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125)
Q5X521 1.06e-60 203 30 5 389 3 bamB Outer membrane protein assembly factor BamB Legionella pneumophila (strain Paris)
Q5X521 5.7e-06 51 31 2 98 3 bamB Outer membrane protein assembly factor BamB Legionella pneumophila (strain Paris)
Q9HXJ7 6.82e-60 201 32 4 379 1 bamB Outer membrane protein assembly factor BamB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
E4PKG3 2.35e-59 200 32 3 349 3 bamB Outer membrane protein assembly factor BamB Marinobacter adhaerens (strain DSM 23420 / HP15)
Q8P980 8.12e-57 194 32 3 384 3 bamB Outer membrane protein assembly factor BamB Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q0A984 9.93e-57 193 33 1 361 3 bamB Outer membrane protein assembly factor BamB Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1)
Q63UT0 2e-55 189 32 6 372 3 bamB Outer membrane protein assembly factor BamB Burkholderia pseudomallei (strain K96243)
C6BGE7 3.83e-54 186 33 7 371 3 bamB Outer membrane protein assembly factor BamB Ralstonia pickettii (strain 12D)
Q7VWL3 1.7e-50 177 31 6 387 3 bamB Outer membrane protein assembly factor BamB Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q5NIB1 7.55e-46 166 26 10 398 3 bamB Outer membrane protein assembly factor BamB Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
Q0AE45 7.94e-44 160 31 3 326 3 bamB Outer membrane protein assembly factor BamB Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57)
F8GAQ8 2.55e-39 150 24 7 382 3 bamB Outer membrane protein assembly factor BamB Francisella salina
G4Q9J6 1.78e-37 142 27 7 395 3 bamB Outer membrane protein assembly factor BamB Taylorella asinigenitalis (strain MCE3)
Q9ZDU2 5.85e-11 67 21 3 266 4 RP232 Uncharacterized protein RP232 Rickettsia prowazekii (strain Madrid E)
Q92IV6 3.17e-10 65 21 3 260 4 RC0314 Uncharacterized protein RC0314 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9RRH3 1.57e-07 57 25 9 325 1 rqkA DNA damage-responsive serine/threonine-protein kinase RqkA Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P54741 2.75e-06 53 31 3 122 1 afsK Serine/threonine-protein kinase AfsK Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P54741 3.89e-05 49 25 12 288 1 afsK Serine/threonine-protein kinase AfsK Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q4L235 1.01e-05 51 20 13 328 1 AASDH Beta-alanine-activating enzyme Homo sapiens
Q4L235 7.29e-05 48 20 4 165 1 AASDH Beta-alanine-activating enzyme Homo sapiens
Q8GR64 1.93e-05 50 26 2 134 1 qbdA Quinohemoprotein alcohol dehydrogenase ADH IIB Pseudomonas putida
G8YXZ9 2.47e-05 50 21 11 302 1 tth1 Tetrathionate hydrolase Acidianus ambivalens
Q60282 4.88e-05 49 24 7 183 4 MJECL23 Uncharacterized protein MJECL23 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q60282 0.000391 46 20 17 358 4 MJECL23 Uncharacterized protein MJECL23 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q44002 4.98e-05 49 26 4 162 3 adhA Alcohol dehydrogenase (quinone), dehydrogenase subunit Komagataeibacter europaeus
Q44002 0.000141 47 21 9 293 3 adhA Alcohol dehydrogenase (quinone), dehydrogenase subunit Komagataeibacter europaeus
Q5RG49 6.07e-05 48 21 13 359 3 aasdh Beta-alanine-activating enzyme Danio rerio
P28036 7.43e-05 48 26 4 162 1 adhA Alcohol dehydrogenase (quinone), dehydrogenase subunit Gluconacetobacter polyoxogenes
P28036 0.000287 46 26 2 132 1 adhA Alcohol dehydrogenase (quinone), dehydrogenase subunit Gluconacetobacter polyoxogenes
F4K1G2 7.74e-05 48 22 13 319 2 At5g35930 Putative acyl-activating enzyme 19 Arabidopsis thaliana
Q80WC9 0.000123 48 24 9 251 1 Aasdh Beta-alanine-activating enzyme Mus musculus
Q80WC9 0.000128 48 20 11 341 1 Aasdh Beta-alanine-activating enzyme Mus musculus
Q46444 0.000242 47 30 5 119 1 qheDH Quinohemoprotein alcohol dehydrogenase Comamonas testosteroni
O05542 0.000247 47 28 2 132 1 adhA Alcohol dehydrogenase (quinone), dehydrogenase subunit Gluconobacter oxydans (strain 621H)
Q4W6G0 0.000711 45 28 7 160 1 qgdA Quinohemoprotein alcohol dehydrogenase ADH-IIG Pseudomonas putida

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07115
Feature type CDS
Gene bamB
Product outer membrane protein assembly factor BamB
Location 1477198 - 1478370 (strand: -1)
Length 1173 (nucleotides) / 390 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_509
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13360 PQQ-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1520 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K17713 outer membrane protein assembly factor BamB - -

Protein Sequence

MQLRKTLLVGFVASVLLAGCSSETDTVVMSPLPEVASQFSPQTVWDKSIGNGIGKYYSHLSPAWEGSTVYAADRNGLVKALDIDSGVEIWSVDLAEKTGFLSSNLSAMLSGGLAVSGEHLYVGTERGALIALNTNNGELAWTQNAGGEVLSRPVVSDGLVLVHTGNGLLQAFDAASGESRWSLNLDTPSLSVRGESAPAISTGAAIVGGDNGRVSAVMLNQGQLIWQQRISMTTGTTEISRLNDVDMTPIVADGRVYAIAYNGNLVSMDMRSGQILWKRDFGSVNEMVLDGESLYIIDQNDNVYAIRAADGVTLWSQDKLQHRNLSAPAIFNGYLVTGDGEGYLHWLDTSTGQFVAQNKLNSSGIFARPSIAGDKLMVQTRDGRLYLLRR

Flanking regions ( +/- flanking 50bp)

GTTATGACATTTAAACTCGATAACTTAGCCGGGTGAGAGGACTATTAATAATGCAACTGCGTAAGACACTCCTGGTTGGTTTCGTTGCTTCTGTACTGCTGGCAGGTTGTTCCAGTGAGACAGATACCGTTGTGATGTCACCATTGCCGGAGGTTGCGAGTCAGTTCTCGCCACAGACCGTGTGGGATAAATCCATCGGTAACGGTATCGGAAAATATTATTCGCATCTTTCGCCGGCCTGGGAAGGATCAACTGTCTATGCCGCTGATCGCAACGGTCTGGTAAAAGCGCTGGATATTGATTCAGGTGTTGAAATCTGGTCAGTCGATCTGGCAGAAAAAACCGGCTTTTTGTCATCTAATCTTTCGGCGATGTTATCCGGTGGTCTGGCCGTTTCCGGTGAACATCTTTATGTCGGTACAGAGCGCGGTGCACTGATTGCACTGAACACCAACAATGGTGAGCTTGCCTGGACACAAAATGCCGGTGGTGAAGTACTTTCCCGCCCGGTGGTCAGTGATGGTCTGGTGCTGGTACATACCGGAAACGGTCTGTTACAGGCATTTGATGCGGCATCCGGTGAATCCCGCTGGAGCCTGAATCTGGATACGCCAAGCTTATCTGTCCGTGGTGAGTCCGCTCCGGCAATCTCTACCGGTGCGGCAATTGTCGGCGGTGATAACGGACGCGTCAGTGCGGTTATGCTGAACCAGGGTCAGTTAATCTGGCAACAGCGGATTTCTATGACAACCGGCACCACTGAAATCAGCCGTCTGAATGATGTGGACATGACACCAATTGTTGCTGATGGCCGTGTTTACGCTATCGCGTATAATGGTAATCTTGTCTCCATGGATATGCGCAGTGGTCAAATCCTGTGGAAACGCGATTTCGGCTCAGTAAATGAAATGGTGCTGGATGGTGAGTCACTTTATATTATTGACCAGAATGACAATGTTTATGCTATCCGCGCGGCGGACGGGGTAACATTGTGGTCACAGGATAAATTGCAGCACCGTAACCTTTCTGCACCTGCAATCTTTAATGGTTATCTGGTGACCGGTGATGGCGAAGGCTATCTCCATTGGTTGGATACCAGCACAGGACAGTTTGTTGCACAAAATAAACTGAACAGCTCCGGCATTTTCGCCCGTCCGTCAATTGCCGGTGATAAACTGATGGTACAGACCCGTGATGGTCGTCTGTATCTGCTCCGCCGCTGACAGAGATTCTCTGTTACCGGTGTAACCTCCGCGGGTCAATAATCCCGCTG