Homologs in group_3833

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS09795 PMI_RS09795 54.4 Proteus mirabilis HI4320 - phage holin family protein

Distribution of the homologs in the orthogroup group_3833

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3833

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q3T4L9 0.000282 40 29 1 92 3 XXXV Holin Enterobacteria phage PRD1

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06175
Feature type CDS
Gene -
Product phage holin family protein
Location 1300436 - 1300747 (strand: -1)
Length 312 (nucleotides) / 103 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3833
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF16083 LydA holin phage, holin superfamily III

Protein Sequence

MKKMPNDPNNYGWFSSLLIVIMTLLGTAASCAYKALNGEVISWGVFFLQMVVSVFAGALVFLAASYYTWVPELSGGIAGLAGWSGAEFIKALEKRIKRKIDNE

Flanking regions ( +/- flanking 50bp)

TACTGTGCGCGGCACCCTATTAACTAAATTCCTCCGTCAGGGGGTGAGCCATGAAAAAGATGCCTAACGACCCGAATAACTACGGCTGGTTCAGTAGTCTGCTGATAGTCATCATGACTTTACTCGGCACTGCTGCCAGTTGTGCCTATAAAGCCCTGAATGGTGAAGTCATCAGCTGGGGCGTTTTCTTTCTTCAGATGGTTGTCTCTGTTTTTGCCGGTGCGCTGGTCTTCCTCGCTGCCAGTTATTATACATGGGTTCCGGAGCTGTCCGGCGGCATTGCAGGTCTGGCGGGATGGTCAGGTGCTGAGTTCATTAAGGCGCTTGAGAAACGGATAAAAAGGAAAATTGATAATGAGTAGCTTCAGATTCAGTAAGCGCAGTGAAGATAACCTGAAAGGCGTCAATCCTG