Homologs in group_3830

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS04015 PMI_RS04015 50.8 Proteus mirabilis HI4320 - type II toxin-antitoxin system HicA family toxin

Distribution of the homologs in the orthogroup group_3830

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3830

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06010
Feature type CDS
Gene -
Product type II toxin-antitoxin system HicA family toxin
Location 1276242 - 1276421 (strand: 1)
Length 180 (nucleotides) / 59 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3830
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF07927 HicA toxin of bacterial toxin-antitoxin,

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1724 General function prediction only (R) R Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07339 mRNA interferase HicA [EC:3.1.-.-] - -

Protein Sequence

MDSRNAIAMIEADGWYLVRVKGSHHQFKHPTKKGLVTVKHPHKDIPLPTLKSIKKQAGL

Flanking regions ( +/- flanking 50bp)

CCAGTTAAGGGTTACTATAACCCCATCGAAACAAAACAGAGAGCCGGAGGATGGATAGCAGAAATGCAATAGCAATGATTGAAGCTGATGGGTGGTATCTGGTAAGAGTAAAAGGCAGTCATCACCAGTTTAAGCACCCGACAAAAAAGGGGTTGGTAACAGTAAAACATCCACACAAAGATATACCGTTACCCACACTAAAAAGCATCAAAAAACAGGCGGGGCTTTAAGCCCCTCCTACCGGAGGTTTTAATGTTATATCCCGTTGCTATTGATAAAA