Homologs in group_975

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05390 FBDBKF_05390 91.4 Morganella morganii S1 xthA exodeoxyribonuclease III
EHELCC_12200 EHELCC_12200 91.4 Morganella morganii S2 xthA exodeoxyribonuclease III
NLDBIP_12540 NLDBIP_12540 91.4 Morganella morganii S4 xthA exodeoxyribonuclease III
LHKJJB_12400 LHKJJB_12400 91.4 Morganella morganii S3 xthA exodeoxyribonuclease III
HKOGLL_11015 HKOGLL_11015 91.4 Morganella morganii S5 xthA exodeoxyribonuclease III
PMI_RS07245 PMI_RS07245 76.0 Proteus mirabilis HI4320 xthA exodeoxyribonuclease III

Distribution of the homologs in the orthogroup group_975

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_975

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09030 7.51e-152 427 74 1 266 1 xthA Exodeoxyribonuclease III Escherichia coli (strain K12)
P0A1A9 3.26e-150 423 73 1 266 3 xthA Exodeoxyribonuclease III Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1B0 3.26e-150 423 73 1 266 3 xthA Exodeoxyribonuclease III Salmonella typhi
P44318 2.97e-142 403 70 1 266 3 xthA Exodeoxyribonuclease III Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37454 1.47e-36 133 31 8 268 1 exoA Exodeoxyribonuclease Bacillus subtilis (strain 168)
O26314 3.88e-35 129 32 11 273 1 MTH_212 DNA uridine endonuclease Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
A0MTA1 3.55e-32 123 31 9 267 1 apex1 DNA repair nuclease APEX1 Danio rerio
P27864 4.34e-28 116 30 7 270 1 Rrp1 Recombination repair protein 1 Drosophila melanogaster
A1YES6 6.95e-27 109 27 9 268 3 APEX1 DNA repair nuclease/redox regulator APEX1 Gorilla gorilla gorilla
P23196 1.8e-26 108 27 8 268 1 APEX1 DNA repair nuclease/redox regulator APEX1 Bos taurus
P27695 1.82e-26 108 27 8 268 1 APEX1 DNA repair nuclease/redox regulator APEX1 Homo sapiens
A2T6Y4 1.87e-26 108 27 8 268 3 APEX1 DNA repair nuclease/redox regulator APEX1 Pan troglodytes
A1YFZ3 1.87e-26 108 27 8 268 3 APEX1 DNA repair nuclease/redox regulator APEX1 Pan paniscus
P28352 5.44e-26 107 27 8 268 1 Apex1 DNA repair nuclease/redox regulator APEX1 Mus musculus
P51173 8.07e-26 107 28 7 270 2 apeA DNA-(apurinic or apyrimidinic site) endonuclease Dictyostelium discoideum
P43138 8.14e-26 106 27 8 268 1 Apex1 DNA repair nuclease/redox regulator APEX1 Rattus norvegicus
A2T7I6 2.65e-25 105 27 9 268 3 APEX1 DNA repair nuclease/redox regulator APEX1 Pongo pygmaeus
P45951 7.08e-17 83 25 10 282 1 ARP DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic Arabidopsis thaliana
Q6DDT4 1.7e-15 79 27 11 309 1 apex2.L DNA-(apurinic or apyrimidinic site) endonuclease 2 Xenopus laevis
P0A2X4 1.71e-15 77 26 13 295 3 exoA Exodeoxyribonuclease Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A2X3 1.71e-15 77 26 13 295 3 exoA Exodeoxyribonuclease Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q68G58 6.03e-11 65 25 13 328 1 Apex2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Mus musculus
Q9UBZ4 1.24e-10 64 26 15 333 1 APEX2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Homo sapiens
Q5XF07 8.81e-09 58 25 15 317 1 APE1L DNA-(apurinic or apyrimidinic site) endonuclease Arabidopsis thaliana
F4JNY0 3.83e-07 54 24 10 286 1 APE2 DNA-(apurinic or apyrimidinic site) endonuclease 2 Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05845
Feature type CDS
Gene xthA
Product exodeoxyribonuclease III
Location 1243255 - 1244064 (strand: 1)
Length 810 (nucleotides) / 269 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_975
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03372 Endonuclease/Exonuclease/phosphatase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0708 Replication, recombination and repair (L) L Exonuclease III

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01142 exodeoxyribonuclease III [EC:3.1.11.2] Base excision repair -

Protein Sequence

MKFVSFNINGLRARPHQLEAIIEQHQPDVIGLQEIKVHDDMFPHDALKHLGYHIFHHGQKSHYGVALLTKNEPVAVRKGFAGDDEDAQRRLIMADIETPAGLLTVINGYFPQGESRDHPLKFPAKMKFYQDLQDYLSGRSNQDPIIVMGDVNISHTDIDIGIGEANRKRWLKTGKCSFLPEEREWMERLLSWGLTDTFRAMYPDTDDRFSWFDYRSRGFDENRGLRIDLILASLGLAPRCTATGIDYDIRGMEKPSDHAPIWAEFDLTR

Flanking regions ( +/- flanking 50bp)

CCGTGATCTGTTACTCTTTTGTTGTTAACTCATCAACCGGTTGAAATTCTATGAAGTTTGTCTCTTTTAATATTAACGGGTTAAGAGCCCGGCCCCATCAGCTTGAAGCCATTATCGAGCAACATCAGCCTGATGTTATCGGCTTGCAGGAAATCAAAGTTCACGACGACATGTTTCCTCATGATGCGCTTAAACATCTGGGTTACCACATTTTTCATCATGGTCAGAAATCACACTATGGTGTTGCGCTGCTGACAAAAAATGAGCCGGTTGCCGTACGCAAAGGATTTGCCGGTGATGACGAAGATGCTCAGCGCCGCCTTATTATGGCTGATATTGAAACGCCTGCCGGGTTACTCACTGTTATTAACGGCTATTTCCCGCAAGGTGAAAGCCGCGATCACCCGCTGAAATTTCCGGCAAAAATGAAATTTTATCAGGATTTACAAGACTACCTGTCGGGGCGTTCAAATCAGGATCCGATCATTGTCATGGGTGACGTGAATATAAGCCACACAGATATTGATATCGGTATTGGTGAAGCTAACCGCAAACGCTGGCTGAAAACAGGAAAATGCTCTTTCCTGCCGGAAGAACGTGAATGGATGGAGCGCCTGCTCAGCTGGGGGCTGACTGATACTTTCCGTGCGATGTATCCGGATACGGACGACCGCTTCTCGTGGTTTGATTACCGCTCACGCGGGTTTGATGAAAACCGGGGTCTGCGTATTGATCTTATCCTGGCAAGCCTTGGACTGGCACCGCGTTGTACTGCCACCGGCATTGATTATGACATCCGCGGTATGGAAAAACCCTCTGACCACGCACCCATCTGGGCAGAATTTGATCTGACCCGCTGACAATATCAGATATAAAAAGTCAGACCCGAAAGAAATAACATAAATGAAGC