Homologs in group_963

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05305 FBDBKF_05305 93.1 Morganella morganii S1 ddpA ABC-type transport system, periplasmic component
EHELCC_12285 EHELCC_12285 93.1 Morganella morganii S2 ddpA ABC-type transport system, periplasmic component
NLDBIP_12625 NLDBIP_12625 93.1 Morganella morganii S4 ddpA ABC-type transport system, periplasmic component
LHKJJB_12485 LHKJJB_12485 93.1 Morganella morganii S3 ddpA ABC-type transport system, periplasmic component
HKOGLL_11100 HKOGLL_11100 93.1 Morganella morganii S5 ddpA ABC-type transport system, periplasmic component
PMI_RS07165 PMI_RS07165 72.7 Proteus mirabilis HI4320 - ABC transporter substrate-binding protein

Distribution of the homologs in the orthogroup group_963

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_963

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76128 3.02e-43 164 28 14 514 2 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA Escherichia coli (strain K12)
P23847 3.21e-18 91 21 12 474 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
Q0TJL8 7.06e-17 87 23 14 493 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q1RE95 1.79e-16 85 23 13 491 3 gsiB Glutathione-binding protein GsiB Escherichia coli (strain UTI89 / UPEC)
Q8CW88 1.79e-16 85 23 13 491 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A968 1.79e-16 85 23 13 491 3 gsiB Glutathione-binding protein GsiB Escherichia coli O1:K1 / APEC
Q8X6V9 1.99e-16 85 23 13 491 3 gsiB Glutathione-binding protein GsiB Escherichia coli O157:H7
Q323W4 4.72e-16 84 23 13 491 3 gsiB Glutathione-binding protein GsiB Shigella boydii serotype 4 (strain Sb227)
Q32IB6 5.34e-16 84 22 12 484 3 gsiB Glutathione-binding protein GsiB Shigella dysenteriae serotype 1 (strain Sd197)
Q821B3 8.19e-16 83 23 13 491 3 gsiB Glutathione-binding protein GsiB Shigella flexneri
Q3Z3V3 1.2e-15 83 23 13 491 3 gsiB Glutathione-binding protein GsiB Shigella sonnei (strain Ss046)
Q6D3B0 2.27e-15 82 21 12 466 3 gsiB Glutathione-binding protein GsiB Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P75797 4.2e-15 81 22 13 491 1 gsiB Glutathione-binding protein GsiB Escherichia coli (strain K12)
Q5PGP4 1.19e-14 80 23 11 415 3 gsiB Glutathione-binding protein GsiB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q0T6D2 1.27e-14 80 22 14 493 3 gsiB Glutathione-binding protein GsiB Shigella flexneri serotype 5b (strain 8401)
Q8Z863 1.3e-14 80 23 11 415 3 gsiB Glutathione-binding protein GsiB Salmonella typhi
A0A0H2ZGV7 1.44e-14 79 21 12 458 1 dppA4 Di/tripeptide-binding protein 4 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q8ZQM3 1.78e-14 79 22 11 415 3 gsiB Glutathione-binding protein GsiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57RB1 2.3e-14 79 23 11 415 3 gsiB Glutathione-binding protein GsiB Salmonella choleraesuis (strain SC-B67)
Q9HVS4 1.69e-13 76 22 15 460 1 PA4497 Tripeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGW2 1.79e-13 76 22 15 460 1 dppA2 Di/tripeptide-binding protein 2 Pseudomonas aeruginosa (strain UCBPP-PA14)
P33950 2.02e-13 76 21 13 480 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HVS1 1.29e-12 73 22 17 500 1 PA4500 Dipeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZI72 1.81e-12 73 21 12 459 1 dppA5 Probable di/tripeptide-binding protein 5 Pseudomonas aeruginosa (strain UCBPP-PA14)
P26906 3.55e-12 72 23 19 543 1 dppE Dipeptide-binding protein DppE Bacillus subtilis (strain 168)
A0A0H2ZGN2 1.25e-11 70 22 17 485 1 dppA3 Di/tripeptide-binding protein 3 Pseudomonas aeruginosa (strain UCBPP-PA14)
P77348 3.51e-10 66 23 24 561 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)
A0A0H2ZGV2 7.59e-10 65 21 18 516 1 dppA1 Di/tripeptide-binding protein 1 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q47622 9.1e-10 64 22 12 455 3 sapA Probable ABC transporter periplasmic-binding protein SapA Escherichia coli (strain K12)
Q8FW84 2.95e-09 63 23 7 289 3 BRA0576 Putative binding protein BRA0576/BS1330_II0571 Brucella suis biovar 1 (strain 1330)
A2RI74 6.19e-09 62 25 19 440 1 dppA Dipeptide-binding protein Lactococcus lactis subsp. cremoris (strain MG1363)
Q2YKJ5 6.45e-09 62 23 7 289 3 BAB2_0664 Putative binding protein BAB2_0664 Brucella abortus (strain 2308)
Q577X5 6.45e-09 62 23 7 289 3 BruAb2_0648 Putative binding protein BruAb2_0648 Brucella abortus biovar 1 (strain 9-941)
Q8YC41 6.91e-09 62 23 7 289 3 BMEII0691 Putative binding protein BMEII0691 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P33590 8.67e-09 61 23 15 439 1 nikA Nickel-binding periplasmic protein Escherichia coli (strain K12)
P71370 1.55e-08 60 22 20 553 3 oppA Periplasmic oligopeptide-binding protein OppA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36634 8.44e-08 58 22 14 436 2 sapA Peptide transport periplasmic protein SapA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42061 2.32e-07 57 21 16 449 1 appA Oligopeptide-binding protein AppA Bacillus subtilis (strain 168)
P45285 9.16e-07 55 21 6 323 3 sapA Peptide transport periplasmic protein SapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A9CIN5 5.57e-06 52 23 11 310 3 yepA Peptidoglycan-binding protein YepA Agrobacterium fabrum (strain C58 / ATCC 33970)
Q46863 7.52e-06 52 21 16 535 1 ygiS Probable deoxycholate-binding periplasmic protein YgiS Escherichia coli (strain K12)
Q8FWN7 9.17e-05 48 21 12 336 3 BRA0409 Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 Brucella suis biovar 1 (strain 1330)
Q2YK66 9.17e-05 48 21 12 336 3 BAB2_0812 Putative ABC transporter peptide-binding protein BAB2_0812 Brucella abortus (strain 2308)
Q577J8 9.17e-05 48 21 12 336 3 BruAb2_0792 Putative ABC transporter peptide-binding protein BruAb2_0792 Brucella abortus biovar 1 (strain 9-941)
A5VU91 9.17e-05 48 21 12 336 3 BOV_A0352 Putative ABC transporter peptide-binding protein BOV_A0352 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q8YBP0 9.74e-05 48 21 12 336 3 BMEII0859 Putative ABC transporter peptide-binding protein BMEII0859 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2FVE7 0.000272 47 20 13 433 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P55691 0.000319 47 21 7 292 3 NGR_a00920 Uncharacterized protein y4wM Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05760
Feature type CDS
Gene -
Product ABC transporter substrate-binding protein
Location 1224560 - 1226128 (strand: 1)
Length 1569 (nucleotides) / 522 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_963
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0747 Amino acid transport and metabolism (E) E ABC-type transport system, periplasmic component

Protein Sequence

MRKTTLSVSLALLFSTSVFAATPPGTLIVVQGLDDIVSLDPAESNELSSIQTVPSLYQRIVQPNRDNPAQLDAILLEDWQADPANKTLTVRIKENAQFASGNPVRPEDIIFSYQRAVTMNKSPAFILNILGWNKDNIAQQFEKTGDRTLKIKWSADISPDVALNLLSTPIASVVDEKLVTPNIKNNDFGNAWLKMHSAGSGAYFLKVYQPNQAIVMAANPHVSTGEAKIASIIIKNVPDPASRRLLIQQGDADIARELGADQTAALKNTAGIRVENIPSAEQDYLAFNTGNSANPLLKNPALWEAARYLVDYEGITKDLLKGQYFVHQSFLPVGLPGTLTNNPYKFDPAKAKAILEKAGIKDAHFTLDVENKPPYITIAQSLQASFAQGGIRVELLPAAGSQVYSRVRARSHQAAVRFWIPDYFDAHSNASAFAFNDGKSSTVAWLNGWDIPALSEMTLKAVAEPDKAKRTQMYAAMQEELQRSSPYVFMAQGQNQVVLRDNVKGYQQGLNADMVYYDRVTK

Flanking regions ( +/- flanking 50bp)

TAACGTGTCATTATTAAAACAGATACCCAACATCATTCAGGGGACGCATCATGAGAAAAACAACACTGTCAGTGTCATTGGCTCTGCTCTTTTCAACCTCCGTATTCGCCGCAACACCACCGGGTACGCTGATTGTTGTTCAGGGGCTGGATGATATTGTCAGCCTTGACCCCGCCGAAAGTAATGAGCTTTCCAGTATTCAGACTGTCCCGAGCTTATATCAGCGCATTGTTCAGCCCAACCGTGATAATCCGGCACAGCTTGATGCCATCTTATTAGAAGACTGGCAGGCGGATCCTGCGAATAAAACGCTGACTGTCCGTATTAAAGAAAATGCACAGTTTGCTTCCGGTAACCCGGTACGACCTGAAGATATTATTTTCTCTTATCAGCGCGCAGTGACGATGAATAAATCACCGGCATTTATTCTCAATATCCTCGGCTGGAATAAAGACAATATTGCACAGCAATTTGAAAAAACCGGTGATCGGACACTTAAAATTAAATGGAGTGCGGATATCAGCCCGGATGTGGCACTTAATTTATTATCCACACCGATTGCATCCGTTGTAGATGAAAAATTAGTGACACCGAATATTAAAAATAATGATTTCGGTAACGCCTGGCTGAAAATGCATTCTGCCGGCAGCGGTGCCTATTTTCTTAAAGTTTATCAGCCGAATCAGGCTATTGTGATGGCGGCTAACCCGCATGTTTCTACCGGTGAAGCTAAAATTGCCTCTATTATTATTAAAAACGTGCCGGACCCGGCATCGCGCCGCCTGCTTATTCAGCAGGGAGATGCGGATATTGCCCGCGAACTGGGGGCTGACCAGACTGCCGCACTGAAAAATACCGCCGGTATCAGAGTGGAAAATATTCCGTCCGCCGAACAGGATTATCTGGCGTTCAACACCGGGAACAGTGCAAATCCGCTGCTGAAGAACCCGGCGCTGTGGGAAGCAGCACGTTATCTGGTTGATTATGAAGGCATTACCAAAGATTTACTGAAAGGTCAGTATTTTGTTCATCAGAGCTTCCTGCCGGTCGGTTTACCCGGCACGCTGACTAATAATCCGTATAAATTTGATCCGGCCAAAGCAAAAGCCATTCTGGAAAAAGCCGGTATTAAAGATGCTCACTTCACACTTGATGTAGAGAATAAACCGCCGTATATCACTATCGCGCAATCACTTCAGGCAAGCTTTGCACAGGGCGGAATTCGTGTGGAGCTTCTGCCTGCGGCGGGCAGCCAGGTGTATTCACGGGTGCGGGCGCGTTCACATCAGGCGGCGGTTCGTTTCTGGATCCCGGACTATTTTGATGCACACTCAAACGCCAGCGCATTTGCCTTTAATGACGGCAAAAGCAGTACTGTCGCATGGCTGAACGGCTGGGATATTCCCGCGCTGTCAGAAATGACACTGAAAGCCGTGGCAGAGCCTGATAAAGCCAAACGCACACAGATGTATGCCGCGATGCAGGAAGAATTACAGCGCAGTTCACCGTATGTGTTTATGGCTCAGGGACAAAACCAGGTTGTTCTGCGCGATAATGTGAAAGGCTATCAGCAGGGACTGAATGCGGATATGGTGTATTACGACAGAGTGACCAAATAACCCACTGATACTCGTCATACTTCAAGATGCAGCCAACAAATCTGTTGTGT