Homologs in group_942

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05125 FBDBKF_05125 95.1 Morganella morganii S1 sohB protease SohB
EHELCC_12465 EHELCC_12465 95.1 Morganella morganii S2 sohB protease SohB
NLDBIP_12805 NLDBIP_12805 95.1 Morganella morganii S4 sohB protease SohB
LHKJJB_12665 LHKJJB_12665 95.1 Morganella morganii S3 sohB protease SohB
HKOGLL_11280 HKOGLL_11280 95.1 Morganella morganii S5 sohB protease SohB
PMI_RS06445 PMI_RS06445 67.0 Proteus mirabilis HI4320 sohB protease SohB

Distribution of the homologs in the orthogroup group_942

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_942

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AG15 8.81e-139 400 61 2 349 3 sohB Probable protease SohB Shigella flexneri
P0AG14 8.81e-139 400 61 2 349 1 sohB Probable protease SohB Escherichia coli (strain K12)
P45315 1.06e-117 347 53 2 341 3 sohB Probable protease SohB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q44600 6.98e-108 320 50 2 305 3 sohB Probable protease SohB (Fragment) Buchnera aphidicola subsp. Schlechtendalia chinensis
P57370 4.71e-100 301 47 2 345 3 sohB Probable protease SohB Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9P8 3.3e-92 282 48 4 327 3 sohB Probable protease SohB Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AL0 7.15e-92 281 55 1 244 3 sohB Putative protease SohB Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O34525 4.57e-20 92 31 2 176 1 sppA Putative signal peptide peptidase SppA Bacillus subtilis (strain 168)
Q58067 9.16e-18 85 33 4 184 3 MJ0651 Putative protease MJ0651 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q55682 4.36e-16 80 33 3 175 3 slr0021 Putative protease slr0021 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q2YMB3 1.48e-15 81 35 3 169 3 nhaA Na(+)/H(+) antiporter NhaA Brucella abortus (strain 2308)
Q8YFI5 1.57e-15 81 35 3 169 3 nhaA Na(+)/H(+) antiporter NhaA Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q9K809 7.2e-14 75 30 3 172 3 sppA Putative signal peptide peptidase SppA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P73689 1.32e-12 72 27 3 194 3 sppA Protease 4 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9X480 2.65e-12 70 28 2 168 3 sppA Putative signal peptide peptidase SppA Enterococcus faecium
Q9C9C0 6.05e-12 70 34 3 161 2 SPPA Serine protease SPPA, chloroplastic Arabidopsis thaliana
P45243 8.72e-12 69 26 2 167 1 sppA Protease 4 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P08395 9.2e-11 66 27 4 195 1 sppA Protease 4 Escherichia coli (strain K12)
Q8Z6F3 1.73e-10 65 28 3 173 3 sppA Protease 4 Salmonella typhi
Q48513 9.43e-10 61 33 3 138 3 pfaP Putative peptidase PfaP Leptospira borgpetersenii
P03711 9.64e-07 53 27 3 170 1 C Capsid assembly protease C Escherichia phage lambda

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05580
Feature type CDS
Gene sohB
Product protease SohB
Location 1187383 - 1188435 (strand: -1)
Length 1053 (nucleotides) / 350 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_942
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01343 Peptidase family S49
PF08496 Peptidase family S49 N-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0616 Posttranslational modification, protein turnover, chaperones (O) O Periplasmic serine protease, ClpP class

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04774 serine protease SohB [EC:3.4.21.-] - -

Protein Sequence

MEFLSQYGLFLAETVTIVLAIIAIVVFFVMLSIRKGQSLGKLRLTDLGENYRDRQREMQHARMSEAEQKIWNKAFKKQQKNEDKKDKNNAKDGQTRLRKPCVYVIDFKGSLDAHEVESLREEITIILSVAESGLDEVLIRLESPGGLVHAYGLAAAQLTRLREKNIRITIAVDKVAASGGYMMACVADKIVAAPFAILGSIGVVAQVPNIHRLLKKNDIDVEMHTAGQYKRTLTFIGQNTDEGREKFRQELDETHVLFKSFVSENRPSLDIEKVATGEHWYGTQAKDLGLVDEIAVSDDLIIAAIPDHEVIQVRYFRRRRLIDKLTQSVMLSADRLILRWWQRGNGPVGK

Flanking regions ( +/- flanking 50bp)

TTTTTTAGTTAAAATAGCGGCATTCAATTTTTCAGTATTAAGGTGTGCCGGTGGAGTTTCTCTCACAATACGGTTTGTTTCTTGCAGAAACCGTAACAATTGTTCTGGCAATCATTGCCATTGTTGTATTTTTTGTCATGCTCAGCATCCGTAAAGGGCAATCTTTGGGTAAATTGCGTCTGACTGATCTGGGGGAAAATTACCGCGACAGACAGCGTGAAATGCAGCATGCCCGCATGAGTGAAGCGGAGCAGAAAATCTGGAATAAAGCGTTTAAAAAACAACAAAAAAACGAAGATAAAAAAGACAAAAACAATGCAAAAGACGGGCAGACCCGTTTACGCAAGCCATGTGTTTATGTGATTGACTTTAAAGGCAGCCTGGACGCACATGAAGTGGAGTCTCTGCGTGAGGAAATTACCATTATCCTGTCTGTCGCAGAAAGCGGGCTGGATGAAGTACTGATTCGCCTGGAAAGCCCGGGCGGGCTGGTTCATGCATATGGTCTGGCAGCGGCACAACTGACGCGCTTACGTGAGAAAAATATCCGTATCACGATCGCGGTGGATAAAGTAGCGGCCAGCGGCGGGTATATGATGGCGTGTGTGGCAGACAAAATTGTGGCTGCACCGTTTGCTATCCTCGGCTCGATTGGTGTGGTGGCACAGGTACCGAACATTCACCGTCTGCTCAAGAAAAATGATATTGATGTAGAGATGCATACAGCGGGTCAATACAAACGTACGCTGACCTTTATCGGACAGAATACAGATGAAGGGCGTGAAAAATTCCGTCAGGAACTGGATGAAACTCACGTTCTGTTTAAAAGCTTTGTGTCTGAGAATCGTCCGTCACTGGATATTGAAAAAGTGGCAACCGGTGAACACTGGTACGGCACACAGGCAAAAGATCTGGGACTGGTTGATGAAATCGCGGTCAGTGATGATTTAATTATCGCCGCAATACCTGACCACGAAGTGATTCAGGTGCGTTATTTCCGCCGCAGACGGCTTATCGATAAACTGACGCAAAGTGTTATGCTCAGTGCGGATCGTCTTATTCTGCGCTGGTGGCAGCGCGGTAACGGACCGGTCGGAAAATAACCGCAAATAAGCATAAAGTAACGGCAGCTCAGGCTGCCGTTATTGTTTTT