Homologs in group_2583

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02875 FBDBKF_02875 80.7 Morganella morganii S1 tetR TetR family transcriptional regulator
EHELCC_03345 EHELCC_03345 80.7 Morganella morganii S2 tetR TetR family transcriptional regulator
NLDBIP_00115 NLDBIP_00115 80.7 Morganella morganii S4 tetR TetR family transcriptional regulator
LHKJJB_01920 LHKJJB_01920 80.7 Morganella morganii S3 tetR TetR family transcriptional regulator
HKOGLL_01960 HKOGLL_01960 80.7 Morganella morganii S5 tetR TetR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2583

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2583

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05320
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 1129865 - 1130443 (strand: 1)
Length 579 (nucleotides) / 192 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2583
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MTQSRLPPCGRPAHRGSKLTPENILTEAQKMWQAQGKIPSIRALAECLKVDPMAIYYYFRNKQQLLEALATALVDTIYQPDLQAPRQQELCRLAESYLHLLYIYSGLLTVLLSADSDGPSECFRRRYLRIIAPCGLSDARRTAILHLLADALHGHSVAIRRTDYTYEQSLALFQPVLALISELIEYPGVSSS

Flanking regions ( +/- flanking 50bp)

GGATTTTATTCTTAAATATCAACACCATTTCCGGTAACCGGAGACTGAACGTGACCCAATCCCGACTGCCGCCCTGCGGGCGGCCTGCTCACCGGGGCAGTAAACTGACACCGGAAAATATACTGACTGAAGCACAGAAAATGTGGCAGGCACAGGGAAAAATACCTTCGATCCGCGCCCTCGCCGAATGCTTAAAGGTTGATCCGATGGCGATTTATTACTATTTCCGCAACAAGCAGCAGTTACTGGAAGCACTTGCCACCGCGCTGGTCGATACAATTTATCAGCCTGACCTGCAAGCACCCCGGCAGCAGGAATTATGCCGCCTGGCAGAAAGTTATCTGCATCTGCTTTATATTTACAGCGGTTTGCTGACTGTCCTGCTGTCTGCGGACAGTGACGGCCCGTCAGAATGCTTCCGGCGGCGCTATCTGCGCATCATAGCGCCATGCGGGCTGAGTGATGCCCGCCGGACTGCCATTCTGCATCTTCTGGCGGATGCATTGCACGGGCACAGTGTCGCTATCCGCCGCACCGACTATACTTATGAACAGAGCCTGGCGCTCTTTCAGCCCGTTCTGGCACTGATTAGCGAACTAATTGAATATCCCGGAGTATCATCATCATGACTATCCCCACCATGGTTGTCCGCCCTGTCACTGCTCAGCCTGAGGACTAT