Homologs in group_2667

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04735 FBDBKF_04735 35.0 Morganella morganii S1 - Colicin-E3
EHELCC_06025 EHELCC_06025 35.0 Morganella morganii S2 - Colicin-E3
NLDBIP_06345 NLDBIP_06345 35.0 Morganella morganii S4 - Colicin-E3
LHKJJB_03225 LHKJJB_03225 35.0 Morganella morganii S3 - Colicin-E3
HKOGLL_06700 HKOGLL_06700 35.0 Morganella morganii S5 - Colicin-E3

Distribution of the homologs in the orthogroup group_2667

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2667

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P17998 2.56e-09 64 31 5 173 1 cda Colicin-D Escherichia coli
P04419 2.25e-06 55 26 12 275 1 col Colicin-E2 Escherichia coli
P17999 2.32e-06 55 26 12 271 3 None Colicin-E6 Escherichia coli
P00646 2.63e-06 54 26 12 271 1 ceaC Colicin E3 Escherichia coli
Q47112 1.1e-05 52 25 17 281 1 colE7 Colicin-E7 Escherichia coli
P09883 5.69e-05 50 25 12 272 1 col Colicin-E9 Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04520
Feature type CDS
Gene -
Product colicin-like bacteriocin tRNase domain-containing protein
Location 955923 - 958415 (strand: 1)
Length 2493 (nucleotides) / 830 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2667
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF03515 Colicin-like bacteriocin tRNase domain
PF06958 S-type Pyocin

Protein Sequence

MMRKKRGIDKISHTYYEKRDYLRFSEFEHDWGISHTPYGDIYHYDPGRFGGRRTGGDPFSDLPPITHSPDIYPYPGNVIDLGEITVNPDYPDTELTGTDEPDTSEPYLHTAHAGFAVLMYPHHSTLKFTLDIRNISAIVIPIKNYLLLALETVLPVAGRTLGIAGILMPSSIAREPLVIYYHDNSYGEGDDDPYILTTLPALLVTGASAEISTGTKSVPADVIVSLAVSEREGKHTTIITPVKDKMIPVVKAEKTDIPGMYQVNIIPDMPPVRITVINNTRNTIAKTEQTNLTPPVDHYIPANPEIKTHHAIIDFSGEHEAVYLFLTQLPLFEDIESENTIRIWQEQFPVEAARRAYQSAETELNNTTELWNKAISDRKNHREIDLGYQIKNLVYYRRIASRSGYLERKYAEQIQQSIDKHFDVINQHKSAERNFMRAEIQKNRAERHLAMIVARPDWLHRIRNFENRLISLTENSDTFLVNGNKTGQLQISVKGSGIIPQQNKEIFLLHDFLMGIKTVGNDSIDDVSDYHSAGIIQTNSIAGQMAVVVPAGNIKISNGFAERNCRGLWVRDKNTEKLVVVFDVRQHRHGKIPVINAVKDSVTGVYKASLPSSETILINPVNPPVPPGFPGGIAIPELKFPFHTGTSLEIPVIPMNTGFPLPDDISFTDFILVFPDGSGLKPVYIMLSSPYGETNAKGKFSGRNYHTERAGGPVEMLDWRIAVIDREGIDKVRLHISRFGSNAANDIMLERLEYILTGTFPATDTDKRFYTHEIRELERYRNLGIKDGVRPENGGEVWNNTHTATLEDYQLSSDEALLYTEDALFSTYDD

Flanking regions ( +/- flanking 50bp)

GAACCGGCATGCTCAGCAGGAACATAAGCGAATTATTAAAGGAAAAAGGAATGATGAGAAAAAAACGGGGCATTGATAAAATAAGTCATACTTATTACGAAAAACGGGATTATCTGAGATTTTCTGAATTTGAACATGATTGGGGGATCAGCCATACACCATACGGAGATATTTATCATTATGATCCCGGCAGGTTCGGTGGCAGAAGAACCGGAGGTGACCCATTCTCTGATCTGCCTCCGATAACGCATTCCCCGGATATTTATCCGTATCCGGGAAATGTAATTGACTTAGGAGAAATAACCGTAAATCCAGATTATCCGGATACGGAATTAACGGGAACGGATGAACCGGATACAAGCGAGCCTTATTTACATACGGCACATGCCGGTTTTGCAGTATTAATGTATCCGCATCACAGCACCCTGAAATTTACTCTCGATATACGTAATATCTCCGCTATTGTTATTCCGATAAAAAACTATTTATTACTGGCACTGGAAACCGTGCTTCCCGTCGCGGGCAGGACGCTGGGAATTGCCGGAATATTAATGCCATCATCAATCGCAAGAGAGCCTCTGGTTATATACTACCATGATAATAGCTATGGTGAGGGTGACGACGACCCTTATATTCTGACAACACTACCGGCATTACTTGTCACGGGCGCTTCAGCGGAAATATCCACAGGAACAAAATCTGTACCGGCAGATGTGATTGTGTCTTTGGCTGTTAGTGAGCGGGAAGGGAAGCACACTACAATAATTACACCGGTAAAAGATAAAATGATTCCGGTCGTTAAAGCAGAGAAAACAGATATTCCCGGAATGTATCAGGTCAATATAATTCCGGATATGCCTCCTGTCCGTATAACAGTAATAAATAATACCCGAAATACTATCGCCAAAACGGAACAAACTAACCTGACACCCCCTGTAGATCATTATATTCCGGCAAATCCGGAGATTAAAACACACCATGCAATTATTGATTTTTCTGGTGAGCATGAAGCTGTCTATCTGTTCCTGACGCAACTGCCACTATTTGAAGACATTGAATCTGAAAATACCATCCGTATCTGGCAGGAACAGTTTCCGGTTGAGGCGGCACGGAGAGCATATCAATCAGCAGAAACTGAACTGAATAACACCACGGAATTATGGAACAAAGCCATATCTGATCGCAAGAACCACCGGGAAATCGATCTGGGATATCAGATAAAAAATCTTGTGTATTATCGGAGAATAGCGTCACGTTCAGGATATTTGGAAAGAAAATATGCAGAGCAAATTCAGCAAAGCATTGATAAACACTTTGATGTTATTAACCAGCATAAAAGCGCGGAACGTAATTTTATGCGGGCAGAGATACAAAAGAACAGAGCTGAACGACATCTGGCAATGATTGTTGCCAGGCCGGACTGGTTGCATCGTATCCGTAATTTTGAAAACAGACTGATATCACTGACTGAAAATTCGGATACTTTTTTGGTTAACGGAAATAAAACCGGGCAACTTCAGATTTCTGTGAAAGGCAGTGGGATTATCCCGCAACAAAATAAAGAAATTTTTTTGCTCCATGATTTTTTGATGGGGATAAAAACGGTCGGGAATGATTCGATAGATGATGTTTCGGATTATCATTCCGCCGGAATAATACAGACGAACAGTATTGCAGGGCAAATGGCGGTGGTCGTTCCTGCCGGTAATATAAAAATATCGAATGGCTTTGCCGAAAGAAATTGTCGTGGCTTATGGGTTCGTGACAAAAACACAGAAAAACTGGTAGTCGTTTTTGATGTTCGTCAGCATCGTCACGGGAAGATCCCGGTTATTAACGCAGTAAAAGATAGTGTTACCGGAGTATATAAAGCGTCTCTGCCATCTTCCGAAACGATTCTTATTAACCCGGTTAACCCGCCGGTCCCGCCCGGATTTCCGGGTGGGATCGCCATTCCTGAGCTGAAATTTCCTTTCCATACAGGAACATCGCTGGAAATACCGGTAATACCGATGAATACGGGTTTCCCGTTACCGGATGATATCTCCTTTACGGATTTCATTCTGGTATTCCCTGACGGCAGCGGGCTAAAGCCGGTATATATTATGCTCAGCAGCCCTTATGGTGAAACCAATGCCAAAGGGAAATTCAGCGGACGGAACTACCATACTGAGCGGGCAGGCGGACCGGTTGAAATGCTTGACTGGCGGATTGCGGTAATAGACCGTGAGGGGATAGACAAGGTAAGATTACATATCAGCCGGTTTGGAAGTAACGCTGCTAATGATATTATGCTTGAACGGCTGGAATATATTCTTACCGGAACGTTTCCGGCGACAGATACAGATAAGCGGTTTTATACTCATGAAATCCGTGAATTGGAGCGTTACCGGAATCTGGGCATAAAAGACGGAGTACGACCTGAGAATGGAGGGGAAGTGTGGAATAATACACATACGGCTACATTAGAAGATTATCAATTGAGTTCGGATGAAGCATTACTTTATACAGAAGATGCTCTGTTTTCAACATATGATGATTGAGGTATAACGTGATTAATTATAATGAAATGGTAAAAAATGAATCAATGGAA