Homologs in group_2502

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01850 FBDBKF_01850 92.4 Morganella morganii S1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
EHELCC_02320 EHELCC_02320 92.4 Morganella morganii S2 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
NLDBIP_01140 NLDBIP_01140 92.4 Morganella morganii S4 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
LHKJJB_00895 LHKJJB_00895 92.4 Morganella morganii S3 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
HKOGLL_00935 HKOGLL_00935 92.4 Morganella morganii S5 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Distribution of the homologs in the orthogroup group_2502

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2502

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36948 1.45e-42 152 32 5 319 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
Q2PBL9 2.23e-34 131 29 11 325 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q7N2D8 6.77e-34 130 29 11 325 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P44736 2.88e-33 128 29 3 293 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q2PBM2 8.52e-33 127 30 10 314 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
P0AGI1 2.37e-31 123 31 5 306 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 2.37e-31 123 31 5 306 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 2.37e-31 123 31 5 306 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
Q1JUP6 8.05e-30 119 29 4 310 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
P0AE27 2.98e-29 117 29 5 309 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 2.98e-29 117 29 5 309 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
A7FMJ8 8.09e-29 117 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL6 1.22e-28 116 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 1.22e-28 116 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 1.22e-28 116 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 1.22e-28 116 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 1.22e-28 116 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
P32720 2.1e-28 115 29 2 306 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
B1JLQ1 3.44e-28 115 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
P55569 3.97e-28 114 29 8 331 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q66EZ0 4.87e-28 114 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 4.87e-28 114 30 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
P77315 9.21e-28 113 31 7 327 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
A1JJ54 2.28e-27 113 30 8 295 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B1JLQ2 1.69e-26 110 30 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 1.69e-26 110 30 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F9 2.01e-26 110 30 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FMJ9 2.27e-26 110 30 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL7 4.97e-26 108 29 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 4.97e-26 108 29 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 4.97e-26 108 29 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 4.97e-26 108 29 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 4.97e-26 108 29 8 331 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
Q2PBM1 1.29e-25 107 30 6 330 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
P37772 4.25e-25 106 30 4 291 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
P44885 1.81e-24 104 29 7 310 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q2PBL8 6.81e-24 103 28 8 322 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
Q7N2D7 7.02e-24 103 29 8 322 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q5PJE5 1.38e-23 102 29 9 332 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z2X7 1.85e-23 102 29 9 332 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q8ZKQ2 1.93e-23 102 29 9 332 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 1.93e-23 102 29 9 332 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 1.93e-23 102 29 9 332 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
P0AGI7 8.94e-23 100 26 5 360 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 8.94e-23 100 26 5 360 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 8.94e-23 100 26 5 360 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 8.94e-23 100 26 5 360 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
A1JJ53 9.73e-23 100 30 9 314 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P45045 1.01e-20 95 26 3 355 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A4WER3 2.36e-20 93 28 8 304 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
Q8Z2X6 1.02e-19 91 29 9 315 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
Q57HE2 3.24e-19 90 26 4 302 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
A9MZG2 4.17e-19 90 29 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8ZKQ3 4.47e-19 90 29 9 306 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 4.47e-19 90 29 9 306 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B1LFA0 1.38e-18 88 29 7 330 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
P0AFS2 1.48e-18 88 30 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 1.48e-18 88 30 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 1.48e-18 88 30 8 330 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 1.48e-18 88 30 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 1.48e-18 88 30 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 1.48e-18 88 30 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
P77672 3.87e-18 87 29 8 295 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 3.87e-18 87 29 8 295 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q8X504 4.05e-18 87 30 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
Q0T4L8 4.06e-18 87 29 8 295 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
Q8XAY8 4.18e-18 87 29 8 295 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
B1IRU6 4.57e-18 87 29 8 295 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 4.57e-18 87 29 8 295 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
A6TEB7 8.76e-18 86 29 6 299 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q4J711 9.74e-18 86 27 6 322 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q83RD8 2.72e-17 84 26 4 291 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
B1LFA1 2.85e-17 84 28 8 295 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
Q8G846 6.19e-17 84 26 10 350 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
A6TEB6 2.7e-16 81 28 7 308 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q57321 1.56e-15 80 25 11 337 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
A4WER2 3.76e-15 78 26 5 308 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
Q9F9B1 9.22e-15 77 25 4 271 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
P39328 8.28e-12 68 28 5 277 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
Q8G845 1.92e-11 67 26 3 286 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
P23200 2.17e-11 67 30 7 320 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
Q56036 3.69e-11 66 29 7 320 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04195
Feature type CDS
Gene -
Product ABC transporter permease
Location 887009 - 888004 (strand: -1)
Length 996 (nucleotides) / 331 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2502
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Protein Sequence

MLNSLRGLLQHHEFWLAVLIVLLCLFLGITNEDFMTLGNVFDMTTSTAILAIMACGLFVVLVSGGIDISFPATAAISQYVMATYVLSQGGNFFIAFAIAAVTGLLLGLINALLIYRLKVPSIIITISTLNIFFGLLIYVTNGEWLYGFPEWFMDGVEVMSFTGTDGYDYGLSLPILTLISVIILTGFLMSKTRIGRQIYAVGGNADAAKRVGISLLGVMLFVYGYMGALAGIASVIQTQITQSVAPNALMGFELTVLAAVVLGGVSMSGGKGSLTGVILGVALLAVVKNGLTLTGVPSYWHTVLTGFIIVISISLTAYNEKRRAANGGHLS

Flanking regions ( +/- flanking 50bp)

TGAATTCAGTCCGTTAACATCGACAGAGAAAGAAATAATGGAGGCTGTCAATGCTTAATTCACTGCGGGGGCTGTTACAGCACCACGAGTTCTGGCTGGCAGTATTGATTGTGCTGCTCTGCCTGTTCCTCGGTATCACCAATGAAGATTTTATGACGCTGGGTAATGTCTTTGACATGACCACCAGCACGGCAATTCTTGCCATTATGGCCTGCGGTCTGTTTGTGGTACTGGTTTCCGGCGGGATAGATATCTCGTTTCCGGCAACGGCGGCCATCTCTCAGTATGTAATGGCAACGTATGTTCTGTCTCAGGGCGGCAATTTCTTTATCGCTTTTGCCATTGCCGCAGTCACGGGGCTGCTGCTCGGGCTGATTAACGCCCTGCTTATCTATCGCCTGAAAGTGCCGTCCATCATTATTACTATCTCCACACTGAATATCTTTTTCGGTCTGCTGATTTATGTGACTAACGGCGAGTGGCTGTACGGCTTCCCGGAATGGTTTATGGATGGCGTTGAAGTGATGTCATTTACCGGCACTGATGGTTACGATTACGGGCTTTCCCTGCCAATCCTGACCCTGATTTCTGTGATTATACTGACCGGTTTCCTGATGAGCAAAACCCGCATCGGACGCCAGATTTACGCGGTCGGCGGTAATGCCGATGCCGCAAAGCGGGTCGGTATCAGCCTGTTGGGCGTAATGCTGTTTGTTTACGGCTATATGGGTGCGCTGGCAGGTATTGCTTCTGTGATACAAACACAGATAACTCAGTCTGTGGCACCGAATGCCCTGATGGGGTTTGAATTAACCGTACTCGCCGCTGTGGTTCTGGGCGGGGTGAGCATGTCCGGCGGAAAAGGCTCACTCACCGGTGTGATTCTGGGGGTTGCGCTGCTGGCTGTCGTGAAGAACGGACTGACACTGACGGGCGTTCCGTCTTACTGGCACACGGTTCTGACCGGTTTTATTATTGTAATCAGTATCAGCCTGACCGCGTACAACGAAAAACGCCGGGCAGCTAACGGAGGTCATCTGTCATGATGTCAATGCTGAATCTGCGGAGTGACCGCAATATTATTTATCTGCTGGTC