Homologs in group_34

Help

14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13325 FBDBKF_13325 26.2 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08770 EHELCC_08770 26.2 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09095 NLDBIP_09095 26.2 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05170 LHKJJB_05170 26.2 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_05745 HKOGLL_05745 26.2 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS01705 F4V73_RS01705 24.3 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS03430 F4V73_RS03430 25.2 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS04870 F4V73_RS04870 19.3 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS12525 F4V73_RS12525 21.3 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS17025 F4V73_RS17025 18.9 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS04495 PMI_RS04495 21.5 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS05115 PMI_RS05115 27.2 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS14600 PMI_RS14600 21.8 Proteus mirabilis HI4320 chbR transcriptional regulator ChbR
PMI_RS18315 PMI_RS18315 19.7 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of the homologs in the orthogroup group_34

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_34

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P40883 4.89e-53 177 36 0 251 2 pchR Regulatory protein PchR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P26993 1.68e-06 52 35 1 74 1 exsA HTH-type transcriptional regulator ExsA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P28808 2.47e-06 51 32 1 77 4 lcrF Thermoregulatory protein LcrF Yersinia pestis
P0C2V5 2.66e-06 51 32 1 77 2 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica
P40408 3.11e-06 51 37 1 75 1 btr HTH-type transcriptional activator Btr Bacillus subtilis (strain 168)
B7LVD8 1.03e-05 49 38 1 72 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B6I4P8 1.4e-05 49 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SE11)
Q83PE0 1.82e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri
Q0SZ95 1.82e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Shigella flexneri serotype 5b (strain 8401)
B1LMU6 1.94e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain SMS-3-5 / SECEC)
B5BJG8 2e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain AKU_12601)
Q5PKG2 2e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q0TAF8 2e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B5YZ43 2e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X897 2e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O157:H7
B7UNM6 2e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q31U84 2.04e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 4 (strain Sb227)
P09377 2.04e-05 48 34 2 89 1 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12)
B1IVH3 2.04e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A709 2.04e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O9:H4 (strain HS)
B1XB72 2.04e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / DH10B)
C5A073 2.04e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain K12 / MC4100 / BW2952)
B7M6V7 2.04e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O8 (strain IAI1)
B7L9G1 2.04e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain 55989 / EAEC)
Q1R414 2.05e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli (strain UTI89 / UPEC)
B7NFK3 2.05e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
A1AI82 2.05e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O1:K1 / APEC
B7NUA1 2.05e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MI37 2.05e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O45:K1 (strain S88 / ExPEC)
B4TBY3 2.07e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella heidelberg (strain SL476)
B5FPP5 2.09e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella dublin (strain CT_02021853)
A6TGA9 2.09e-05 48 34 1 78 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q3YV71 2.15e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Shigella sonnei (strain Ss046)
P0A2S9 2.15e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T0 2.15e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella typhi
C0Q3L4 2.15e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi C (strain RKS4594)
A9MZC8 2.15e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SZZ3 2.15e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella newport (strain SL254)
B5RFC3 2.15e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWY4 2.15e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella enteritidis PT4 (strain P125109)
Q8CXW5 2.15e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B7N2P7 2.15e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O81 (strain ED1a)
B4TPQ9 2.23e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella schwarzengrund (strain CVM19633)
B5F0M9 2.23e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella agona (strain SL483)
Q32A70 2.27e-05 48 34 2 89 3 rhaS HTH-type transcriptional activator RhaS Shigella dysenteriae serotype 1 (strain Sd197)
A9MI64 2.27e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q57HG8 2.38e-05 48 35 1 77 3 rhaS HTH-type transcriptional activator RhaS Salmonella choleraesuis (strain SC-B67)
P54722 2.91e-05 48 27 0 93 4 yfiF Uncharacterized HTH-type transcriptional regulator YfiF Bacillus subtilis (strain 168)
A7ZUB7 3.31e-05 48 33 2 89 3 rhaS HTH-type transcriptional activator RhaS Escherichia coli O139:H28 (strain E24377A / ETEC)
A1JU91 3.33e-05 47 31 1 77 3 virF Virulence regulon transcriptional activator VirF Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B5XZ49 3.94e-05 47 34 1 78 3 rhaS HTH-type transcriptional activator RhaS Klebsiella pneumoniae (strain 342)
A4WG91 5.43e-05 47 37 1 72 3 rhaS HTH-type transcriptional activator RhaS Enterobacter sp. (strain 638)
Q46855 7.59e-05 47 31 1 79 4 yqhC Uncharacterized HTH-type transcriptional regulator YqhC Escherichia coli (strain K12)
B2TVP7 0.000101 46 33 2 89 3 rhaS HTH-type transcriptional activator RhaS Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
A8AL27 0.000121 46 36 1 72 3 rhaS HTH-type transcriptional activator RhaS Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
O31249 0.000123 46 33 1 83 4 alkR HTH-type transcriptional regulator AlkR Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
T2KMF4 0.000133 47 32 1 79 3 BN863_21930 Histidine kinase P4 Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)
A9QYR8 0.000144 45 29 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Angola)
B1JNC5 0.000154 45 29 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TRS8 0.000154 45 29 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis (strain Pestoides F)
B2K1W5 0.000154 45 29 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FN80 0.000154 45 29 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q66FF2 0.000168 45 29 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pseudotuberculosis serotype I (strain IP32953)
O31522 0.000478 45 27 0 68 2 yesS HTH-type transcriptional regulator YesS Bacillus subtilis (strain 168)
Q1CEB5 0.000713 43 28 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZJ00 0.000713 43 28 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis
Q1C0W1 0.000713 43 28 1 98 3 rhaS HTH-type transcriptional activator RhaS Yersinia pestis bv. Antiqua (strain Antiqua)
O87389 0.000812 43 35 1 77 4 glxA HTH-type transcriptional regulator GlxA Rhizobium meliloti (strain 1021)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04165
Feature type CDS
Gene -
Product AraC family transcriptional regulator
Location 878917 - 879759 (strand: 1)
Length 843 (nucleotides) / 280 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_34
Orthogroup size 15
N. genomes 7

Actions

Genomic region

Domains

PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12243 AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors - -

Protein Sequence

MHSGKMNALLPGADSFFYCGKMTPDAGQWVSEPLWKGLKLVLMMNGELECQPDNKNSVSLSGASLCVIANNDEQESRQRFLQSEDIRFVSVCLSDSLLDAFNISPPPLLTDAVSRGPQLLSGKAGNVLTVLGNQILNNPLGGAPGEMYLAGKILELCAYSFEHIQQNTRTVHHPKLATHDIHRLYEIRDCILADLANPPGVYQLSRQSGLNMRKLSFGFKQLFGLSVTSFIQEERLQSAHRLLCAGDMRVSAIAWQVGYSPAAFSTAFRRRFGFSPKELC

Flanking regions ( +/- flanking 50bp)

TGATAATGGTTATTATTCGCCTTTATTAAAGAGGCAAAAGGTGAAGTATCATGCACAGTGGTAAAATGAATGCATTGTTACCCGGTGCAGACTCTTTCTTTTATTGCGGAAAGATGACACCGGATGCCGGGCAATGGGTCAGCGAGCCGTTATGGAAAGGACTGAAACTGGTTCTGATGATGAATGGTGAACTGGAATGTCAGCCGGATAATAAAAACAGTGTTTCACTTTCCGGCGCGTCTTTGTGTGTTATTGCCAACAATGATGAACAGGAAAGCCGCCAACGTTTTTTACAGTCAGAAGATATCCGTTTTGTTTCAGTCTGTTTATCTGACAGCCTGCTGGATGCATTTAACATTTCACCGCCGCCTTTATTAACCGATGCTGTATCGCGCGGACCGCAATTACTGTCCGGTAAAGCCGGTAATGTATTAACCGTGCTGGGAAATCAAATCCTGAATAATCCGCTTGGCGGTGCGCCGGGAGAGATGTATCTGGCAGGTAAAATTCTTGAGTTATGCGCTTATTCATTTGAACATATTCAGCAAAATACCCGGACGGTTCATCACCCTAAATTAGCGACGCATGATATACACCGTTTGTATGAAATAAGAGACTGTATTTTAGCCGATTTAGCCAACCCGCCGGGGGTATATCAGCTCAGCCGGCAATCCGGGCTGAATATGCGCAAACTCAGTTTTGGTTTTAAGCAGTTATTCGGTTTGTCTGTTACGTCATTTATTCAGGAAGAGCGCTTACAATCAGCGCATCGCCTGCTTTGTGCCGGTGATATGCGGGTATCTGCCATTGCCTGGCAGGTCGGTTATTCTCCGGCTGCGTTTTCAACCGCTTTCCGCAGGCGGTTTGGGTTCTCACCTAAAGAATTATGTTAAATATACTCGTCATACTTCAGGATGCCTGGGTGTTGACTACGCTCAGCCCG