Homologs in group_580

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01660 FBDBKF_01660 83.1 Morganella morganii S1 - DNA polymerase III subunit theta
EHELCC_02130 EHELCC_02130 83.1 Morganella morganii S2 - DNA polymerase III subunit theta
NLDBIP_01330 NLDBIP_01330 83.1 Morganella morganii S4 - DNA polymerase III subunit theta
LHKJJB_00705 LHKJJB_00705 83.1 Morganella morganii S3 - DNA polymerase III subunit theta
HKOGLL_00745 HKOGLL_00745 83.1 Morganella morganii S5 - DNA polymerase III subunit theta
PMI_RS07820 PMI_RS07820 67.6 Proteus mirabilis HI4320 - DNA polymerase III subunit theta

Distribution of the homologs in the orthogroup group_580

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_580

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABT1 8.05e-30 103 67 0 76 3 holE DNA polymerase III subunit theta Shigella flexneri
P0ABS8 8.05e-30 103 67 0 76 1 holE DNA polymerase III subunit theta Escherichia coli (strain K12)
P0ABS9 8.05e-30 103 67 0 76 3 holE DNA polymerase III subunit theta Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABT0 8.05e-30 103 67 0 76 3 holE DNA polymerase III subunit theta Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04000
Feature type CDS
Gene -
Product DNA polymerase III subunit theta
Location 848255 - 848488 (strand: -1)
Length 234 (nucleotides) / 77 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_580
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06440 DNA polymerase III, theta subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02345 DNA polymerase III subunit theta [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MGYNLATLSHEEMDKINVDLAASGVAFKERYNMPVIAEQVQQTQPEILRPYFAERLAFYRARSVHFSRLPYEPNSKR

Flanking regions ( +/- flanking 50bp)

TTAACGTTATACCCTCACCGCTATACCCTCACCAAAAACAGGAGCATATTGTGGGTTATAATCTGGCAACACTCAGCCATGAAGAAATGGACAAAATTAATGTGGATCTGGCGGCATCCGGCGTGGCATTTAAAGAGCGCTATAATATGCCGGTGATTGCAGAACAGGTACAGCAGACACAACCTGAAATACTGCGTCCGTATTTTGCTGAACGCCTGGCGTTTTACCGTGCGCGGAGTGTGCACTTCTCCCGCCTGCCGTACGAGCCGAATAGTAAGCGATAAGGGCCCGCCTGAGCGCGCCCTTCTATACCCTTATTCATTCAAACTGCAGG