Homologs in group_2492

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01625 FBDBKF_01625 98.5 Morganella morganii S1 manY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component
EHELCC_02095 EHELCC_02095 98.5 Morganella morganii S2 manY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component
NLDBIP_01365 NLDBIP_01365 98.5 Morganella morganii S4 manY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component
LHKJJB_00670 LHKJJB_00670 98.5 Morganella morganii S3 manY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component
HKOGLL_00710 HKOGLL_00710 98.5 Morganella morganii S5 manY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component

Distribution of the homologs in the orthogroup group_2492

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2492

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69804 4.84e-141 399 84 1 266 3 manY PTS system mannose-specific EIIC component Shigella flexneri
P69801 4.84e-141 399 84 1 266 1 manY PTS system mannose-specific EIIC component Escherichia coli (strain K12)
P69802 4.84e-141 399 84 1 266 3 manY PTS system mannose-specific EIIC component Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69803 4.84e-141 399 84 1 266 3 manY PTS system mannose-specific EIIC component Escherichia coli O157:H7
P37082 4.71e-110 321 59 0 249 2 sorA PTS system sorbose-specific EIIC component Klebsiella pneumoniae
Q9RGG3 1.32e-106 313 55 2 276 2 sorC PTS system sorbose-specific EIIC component Lacticaseibacillus casei
P26381 4.28e-72 224 56 1 255 4 levF Fructose permease IIC component Bacillus subtilis (strain 168)
P42910 3.55e-23 98 22 2 261 1 agaC N-acetylgalactosamine permease IIC component 1 Escherichia coli (strain K12)
P42905 1.06e-12 67 35 0 107 5 agaW Putative N-acetylgalactosamine permease IIC component 2 Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03965
Feature type CDS
Gene -
Product PTS mannose/fructose/sorbose transporter subunit IIC
Location 841220 - 842014 (strand: -1)
Length 795 (nucleotides) / 264 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2492
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF03609 PTS system sorbose-specific iic component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3715 Carbohydrate transport and metabolism (G) G Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component

Kegg Ortholog Annotation(s)

Protein Sequence

MELSVVQIVLVFIVACVAGMGSILDEFQFHRPLVACTLMGIVLGDMKTGIMIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGGQNIGAGIALAIPLAAAGQVLTIIVRTITVAFQHMGDRAADKGNLSALGFIHVGALLLQAMRIAIPAVIVAVSVGTDVVREMLDSIPDWVTHGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAAFTDFNLVALGVIGTVMAVLYIQLSPKYNKSEVVVAAGKNDLDNELD

Flanking regions ( +/- flanking 50bp)

TCAATGCAAAATTTGTTTTTCACAACATGATTGGTTAAAGGAGAAAGACAATGGAACTTTCCGTTGTACAAATCGTCCTGGTCTTCATCGTTGCCTGTGTCGCAGGTATGGGGTCAATCCTCGATGAATTCCAGTTTCACCGCCCTCTGGTCGCCTGTACGTTGATGGGGATTGTACTGGGTGATATGAAAACAGGGATAATGATCGGCGGTACGCTGGAAATGATCGCCCTGGGCTGGATGAACATTGGTGCGGCAGTCGCACCGGATGCGGCGCTGGCGTCCATCATTTCCACCATTCTGGTTATTGCCGGCGGGCAAAATATCGGTGCCGGTATTGCACTTGCTATTCCGCTGGCCGCAGCCGGTCAGGTACTGACGATTATCGTCCGTACTATTACTGTCGCCTTCCAGCACATGGGGGACCGTGCCGCAGATAAGGGGAACCTCTCCGCGCTGGGCTTTATCCATGTCGGCGCCCTGCTGCTTCAGGCAATGCGTATCGCTATTCCGGCGGTTATCGTTGCAGTATCAGTCGGGACAGATGTTGTCCGTGAAATGCTGGATTCCATTCCTGACTGGGTCACTCACGGTCTGAATATCGCCGGAGGCATGATCGTTGTTGTCGGTTACGCCATGGTGATTAACATGATGCGTGCCGGTTACCTGATGCCATTCTTCTACTTAGGCTTCGTGACTGCCGCATTCACAGATTTCAACCTGGTTGCCCTGGGTGTTATCGGGACTGTGATGGCTGTGCTGTATATCCAGCTCAGTCCGAAATACAACAAATCGGAAGTCGTTGTCGCTGCCGGCAAGAACGACCTCGATAACGAGTTAGACTAAGAAGGTGAACAACATGGTTGATACAACAAGCAACATAACTGCAAAAAAAC