Homologs in group_1001

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05595 FBDBKF_05595 61.5 Morganella morganii S1 - Phage shock protein D
EHELCC_11995 EHELCC_11995 61.5 Morganella morganii S2 - Phage shock protein D
NLDBIP_12335 NLDBIP_12335 61.5 Morganella morganii S4 - Phage shock protein D
LHKJJB_12195 LHKJJB_12195 61.5 Morganella morganii S3 - Phage shock protein D
HKOGLL_10810 HKOGLL_10810 61.5 Morganella morganii S5 - Phage shock protein D
PMI_RS06630 PMI_RS06630 42.7 Proteus mirabilis HI4320 pspD phage shock protein PspD

Distribution of the homologs in the orthogroup group_1001

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1001

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFV8 6.91e-05 40 48 0 47 2 pspD Phage shock protein D Escherichia coli (strain K12)
P0AFV9 6.91e-05 40 48 0 47 3 pspD Phage shock protein D Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03710
Feature type CDS
Gene -
Product phage shock protein PspD
Location 786828 - 787064 (strand: 1)
Length 237 (nucleotides) / 78 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1001
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF09584 Phage shock protein PspD (Phageshock_PspD)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03971 phage shock protein D - -

Protein Sequence

MKLKNKQTLLRFGKTGLRLLTSAALMAAPAGIAGVVLKSVARQPLRGLVLLALEPALRAGMEKLIRHLPWEKHETTAK

Flanking regions ( +/- flanking 50bp)

GCCTGCATGCATTCTGAGTTATTCAGGGTATATATCAAAGTGATAACGATATGAAATTAAAGAACAAACAGACTTTATTGCGTTTTGGTAAAACCGGGCTGCGCTTATTAACCTCTGCGGCACTGATGGCGGCACCTGCCGGTATTGCCGGGGTGGTGTTAAAATCAGTGGCCCGTCAGCCGTTGCGCGGGCTGGTATTACTGGCTCTTGAGCCTGCACTGCGCGCCGGAATGGAAAAACTGATCCGTCATTTGCCGTGGGAGAAACATGAAACGACTGCAAAATGAACTGAACGCCCTGGTAAACCGGGGGCTGGATCGCCATCTGCGTCTGGCGG