Homologs in group_1019

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05690 FBDBKF_05690 82.1 Morganella morganii S1 - Oxidoreductase
EHELCC_11900 EHELCC_11900 82.1 Morganella morganii S2 - Oxidoreductase
NLDBIP_12240 NLDBIP_12240 82.1 Morganella morganii S4 - Oxidoreductase
LHKJJB_12100 LHKJJB_12100 82.1 Morganella morganii S3 - Oxidoreductase
HKOGLL_10715 HKOGLL_10715 82.1 Morganella morganii S5 - Oxidoreductase
PMI_RS06720 PMI_RS06720 57.7 Proteus mirabilis HI4320 - DUF1289 domain-containing protein

Distribution of the homologs in the orthogroup group_1019

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1019

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64475 1.54e-21 82 51 2 80 4 ydhL Uncharacterized protein YdhL Shigella flexneri
P64474 1.54e-21 82 51 2 80 4 ydhL Uncharacterized protein YdhL Escherichia coli (strain K12)
Q8CW10 9.49e-21 80 48 1 79 4 ydhL Uncharacterized protein YdhL Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03615
Feature type CDS
Gene -
Product DUF1289 domain-containing protein
Location 769216 - 769452 (strand: 1)
Length 237 (nucleotides) / 78 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1019
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06945 Protein of unknown function (DUF1289)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3313 General function prediction only (R) R Predicted Fe-S protein YdhL, DUF1289 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06938 uncharacterized protein - -

Protein Sequence

MAEQLHLFDIPSPCVGICELSEKGYCKGCYRSRDERFQWLSLNNTQKENVLRLCRQRRYRAQKGDILPDEPSSQIDLF

Flanking regions ( +/- flanking 50bp)

GAATAACCGGAAGCCGCCCGCAGGGGCATCAGACGAAAGGACATTATCAGATGGCAGAACAACTCCACCTTTTCGATATTCCTTCACCCTGTGTGGGGATCTGTGAGCTAAGTGAGAAAGGTTACTGCAAAGGTTGCTACCGGAGCCGTGATGAGCGGTTTCAGTGGTTATCCCTGAATAATACCCAAAAAGAGAATGTACTGCGTTTATGCCGCCAGCGTCGTTACAGGGCACAAAAAGGTGACATATTGCCGGATGAACCTTCATCTCAGATAGATTTATTTTAAATTAATAGTTCATATCCTATATATTACCAATGAATTAATTAACAGGTGTT