Homologs in group_1824

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13515 FBDBKF_13515 83.8 Morganella morganii S1 cpmK CpmK protein
EHELCC_08580 EHELCC_08580 83.8 Morganella morganii S2 cpmK CpmK protein
NLDBIP_08905 NLDBIP_08905 83.8 Morganella morganii S4 cpmK CpmK protein
LHKJJB_05360 LHKJJB_05360 83.8 Morganella morganii S3 cpmK CpmK protein
HKOGLL_05555 HKOGLL_05555 83.8 Morganella morganii S5 cpmK CpmK protein
PMI_RS07565 PMI_RS07565 41.9 Proteus mirabilis HI4320 - hypothetical protein

Distribution of the homologs in the orthogroup group_1824

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1824

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03245
Feature type CDS
Gene -
Product hypothetical protein
Location 692034 - 692591 (strand: 1)
Length 558 (nucleotides) / 185 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1824
Orthogroup size 7
N. genomes 7

Actions

Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1733 Transcription (K) K DNA-binding transcriptional regulator, HxlR family

Protein Sequence

MREYLAISTLLFAGFTFAGQTDFYLTELQHKFVENSELCLDEHKWPQLSSSQSEPWMISRLNALATVGLITATIKPEGVEYTLTEKGRDAWQAREDFCYGALRISKVTAIEFQENGINTVYFYYGVTDMPDWARDKSIRYAYSEVDTVIRGMNKEVIQVDVRENPDGTLELLNYPTPASIDSENE

Flanking regions ( +/- flanking 50bp)

ATTACACCAAAACCGGATAAATACATCCGGAAGATGTTGAGACGGGATAGATGAGAGAGTACTTAGCCATAAGCACGCTGTTGTTTGCCGGGTTTACCTTTGCGGGACAAACAGATTTTTATCTGACTGAGCTCCAGCACAAGTTTGTGGAAAACAGTGAATTGTGCCTTGATGAGCACAAATGGCCGCAACTGAGTTCAAGCCAGTCCGAACCCTGGATGATTTCGCGCCTCAATGCTCTGGCAACGGTGGGGTTAATCACTGCAACCATTAAACCTGAAGGTGTGGAGTACACACTGACAGAAAAAGGGCGTGATGCCTGGCAGGCTCGTGAAGATTTCTGTTACGGAGCTCTGCGCATCAGTAAAGTCACTGCCATTGAATTTCAGGAAAACGGTATTAATACCGTTTATTTTTACTATGGTGTGACAGATATGCCGGACTGGGCGCGGGATAAAAGTATCCGCTACGCGTACAGTGAGGTGGATACCGTTATCCGCGGAATGAACAAAGAAGTTATCCAGGTGGATGTCCGCGAAAACCCGGACGGTACCCTGGAGCTGCTTAATTATCCGACACCTGCCAGTATTGACAGTGAAAACGAATAATCCCCAAGACGCGCCCGGGGATATCCGCTCAGCGGGGGAGCCGGTGTTTG