Homologs in group_3824

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS11705 PMI_RS11705 66.7 Proteus mirabilis HI4320 - cupin domain-containing protein

Distribution of the homologs in the orthogroup group_3824

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3824

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q05527 7.24e-06 45 35 2 74 4 kdgF Pectin degradation protein KdgF Dickeya dadantii (strain 3937)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02710
Feature type CDS
Gene -
Product cupin domain-containing protein
Location 570627 - 571025 (strand: 1)
Length 399 (nucleotides) / 132 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3824
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF07883 Cupin domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1917 General function prediction only (R) R Cupin domain protein related to quercetin dioxygenase

Protein Sequence

MGLIPGNELISYDMDLTRKEGEESKALAKFIHGTAFTVTFWTFKTGAIIPEHRHEHETLTTVLSGSLRLVVDGETLILHAGDSGLVPSWATHEAEVLEASEVIDVYTPVREDYVARQTGKFETYLATSQDRT

Flanking regions ( +/- flanking 50bp)

TTTAATTTCATTTTATTGAATTTAATTTACTACTTCAGCAGGAGCACATTATGGGCTTAATACCGGGAAATGAACTGATTTCGTATGATATGGACTTAACCCGCAAAGAGGGGGAAGAGAGTAAAGCGCTGGCTAAGTTTATTCATGGTACGGCGTTCACCGTGACGTTCTGGACTTTTAAAACCGGCGCGATTATTCCGGAACACCGGCATGAACATGAAACGCTGACGACTGTTTTATCGGGTTCGCTGCGCCTGGTTGTTGATGGCGAAACCCTGATCCTGCATGCCGGTGATTCAGGTCTTGTTCCTTCATGGGCAACGCATGAAGCCGAGGTACTTGAAGCCTCTGAAGTGATCGATGTGTATACCCCGGTGCGTGAGGATTATGTCGCGCGTCAGACAGGTAAATTTGAAACTTACCTGGCCACATCACAAGATCGTACATAACTATTTCAGGAGTTGTCAGGTGATAAAAAAACAGGACGGGCTGCAGGAAT