Homologs in group_1908

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14225 FBDBKF_14225 84.2 Morganella morganii S1 yfcH NAD dependent epimerase/dehydratase family enzyme
EHELCC_08055 EHELCC_08055 84.2 Morganella morganii S2 yfcH NAD dependent epimerase/dehydratase family enzyme
NLDBIP_08380 NLDBIP_08380 84.2 Morganella morganii S4 yfcH NAD dependent epimerase/dehydratase family enzyme
LHKJJB_05885 LHKJJB_05885 84.2 Morganella morganii S3 yfcH NAD dependent epimerase/dehydratase family enzyme
HKOGLL_05030 HKOGLL_05030 84.2 Morganella morganii S5 yfcH NAD dependent epimerase/dehydratase family enzyme
PMI_RS08735 PMI_RS08735 58.1 Proteus mirabilis HI4320 - TIGR01777 family oxidoreductase

Distribution of the homologs in the orthogroup group_1908

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1908

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77775 2.05e-132 380 61 1 297 3 yfcH Epimerase family protein YfcH Escherichia coli (strain K12)
P71373 2.26e-79 246 46 4 301 3 HI_1208 Epimerase family protein HI_1208 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4L4J7 3.81e-64 207 37 3 298 3 SH2119 Epimerase family protein SH2119 Staphylococcus haemolyticus (strain JCSC1435)
Q6GIM1 1.22e-63 206 37 4 301 3 SAR0825 Epimerase family protein SAR0825 Staphylococcus aureus (strain MRSA252)
Q9SJU9 9.78e-63 204 39 5 310 2 GC1 Epimerase family protein SDR39U1 homolog, chloroplastic Arabidopsis thaliana
Q2YSF6 1.01e-62 203 37 4 301 3 SAB0724c Epimerase family protein SAB0724c Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q99VK8 1.68e-62 202 37 4 300 3 SAV0769 Epimerase family protein SAV0769 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q7A6Q5 1.68e-62 202 37 4 300 1 SA0724 Epimerase family protein SA0724 Staphylococcus aureus (strain N315)
P73467 2.73e-62 202 38 3 306 3 slr1223 Epimerase family protein slr1223 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q6GB61 3.86e-62 202 37 4 300 3 SAS0734 Epimerase family protein SAS0734 Staphylococcus aureus (strain MSSA476)
Q8NXL7 3.86e-62 202 37 4 300 3 MW0731 Epimerase family protein MW0731 Staphylococcus aureus (strain MW2)
Q5HHP9 8.68e-62 201 36 4 301 3 SACOL0834 Epimerase family protein SACOL0834 Staphylococcus aureus (strain COL)
Q2G035 8.68e-62 201 36 4 301 3 SAOUHSC_00792 Epimerase family protein SAOUHSC_00792 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FIM4 8.68e-62 201 36 4 301 3 SAUSA300_0753 Epimerase family protein SAUSA300_0753 Staphylococcus aureus (strain USA300)
Q8CPY7 2.45e-59 194 35 5 305 3 SE_0553 Epimerase family protein SE_0553 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HQV8 2.45e-59 194 35 5 305 3 SERP0438 Epimerase family protein SERP0438 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
O32960 2.56e-59 194 37 5 304 3 ML0860 Epimerase family protein ML0860 Mycobacterium leprae (strain TN)
P67233 6.22e-58 191 38 5 303 3 BQ2027_MB2239 Epimerase family protein Mb2239 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WGP7 6.22e-58 191 38 5 303 1 Rv2216 Epimerase family protein Rv2216 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGP6 6.22e-58 191 38 5 303 3 MT2273 Epimerase family protein MT2273 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q49VZ4 8.15e-58 190 36 4 302 3 SSP1921 Epimerase family protein SSP1921 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
O31574 8.1e-54 180 36 5 300 3 yfhF Epimerase family protein YfhF Bacillus subtilis (strain 168)
Q5M8N4 6.09e-52 175 34 6 304 1 Sdr39u1 Epimerase family protein SDR39U1 Mus musculus
Q9NRG7 5.68e-50 170 33 6 304 1 SDR39U1 Epimerase family protein SDR39U1 Homo sapiens
Q17QH8 1.9e-49 169 34 8 308 2 SDR39U1 Epimerase family protein SDR39U1 Bos taurus
P24550 1.4e-16 80 42 3 128 3 rcp Protein Rcp Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q46Y59 1.19e-06 52 24 14 333 3 hldD ADP-L-glycero-D-manno-heptose-6-epimerase Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q9Y7K4 0.000112 46 21 9 257 3 SPBC2A9.02 Uncharacterized protein C2A9.02 Schizosaccharomyces pombe (strain 972 / ATCC 24843)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02685
Feature type CDS
Gene -
Product TIGR01777 family oxidoreductase
Location 564727 - 565638 (strand: -1)
Length 912 (nucleotides) / 303 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1908
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01370 NAD dependent epimerase/dehydratase family
PF08338 Domain of unknown function (DUF1731)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1090 General function prediction only (R) R NAD dependent epimerase/dehydratase family enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07071 uncharacterized protein - -

Protein Sequence

MRILITGGTGLIGTPLVQALIARKHHVVVLSRSPQKVYSRFCSAAQHLNSLAGLTHLNDIDAVINLAGEPIADKRWSKEQKERLCESRWKITEQLTTLINASDTPPAVFLSGSAVGWYGDQGQAVVTEAEEPHPEFTHTLCARWEALALWAQSDKTRVCLMRTGIVLSPEGGALAKMLPLYRAGLGGPVGNGRQYMPWIHISDMVSAILFLLDNDAMSGTFNMTAPYPCHNEQFSAVLAQVLHRPHLLRVPAFVIKAILGEAAVLVLGGQNALPERLETAGFTCQFINLEDALRDLLERPADG

Flanking regions ( +/- flanking 50bp)

GCCCGCAATTGCTGCTATAGTCTGAGGAGACCCGGGCATAAGGAGTGACTATGCGTATCCTGATAACAGGTGGTACAGGACTTATAGGTACACCGCTGGTACAGGCGCTTATCGCCCGTAAACATCACGTGGTGGTGCTCAGCCGTTCTCCACAGAAAGTCTATTCCCGTTTTTGTTCTGCTGCACAGCACCTAAACTCTCTTGCCGGATTAACGCATCTTAATGATATTGATGCTGTTATTAATCTTGCCGGTGAACCTATAGCGGATAAACGCTGGAGCAAAGAACAGAAAGAACGGCTGTGCGAGAGTCGCTGGAAGATAACAGAGCAACTCACCACGCTGATTAATGCCAGTGATACGCCGCCTGCGGTGTTTCTTTCAGGCTCAGCTGTCGGTTGGTACGGCGATCAGGGACAGGCGGTGGTGACGGAAGCGGAAGAGCCGCATCCGGAATTTACCCATACACTCTGCGCCCGCTGGGAAGCCCTGGCGCTCTGGGCGCAAAGTGATAAAACCCGCGTTTGTCTGATGCGCACCGGTATTGTGCTCTCTCCCGAAGGCGGTGCGCTGGCAAAAATGCTGCCGCTATACCGTGCAGGTCTTGGTGGACCTGTGGGTAACGGACGTCAATATATGCCGTGGATCCACATCAGTGATATGGTCAGCGCCATCCTGTTCCTGCTGGATAATGATGCGATGAGCGGCACCTTTAATATGACTGCGCCATATCCGTGCCACAATGAACAGTTTTCCGCCGTACTGGCGCAGGTTCTTCACCGCCCGCACCTGCTGCGGGTGCCTGCGTTTGTGATTAAAGCCATATTGGGTGAGGCCGCCGTGCTGGTTCTGGGCGGACAAAATGCCCTGCCTGAGCGGCTGGAAACGGCAGGATTTACCTGTCAGTTTATTAATCTCGAAGATGCACTGCGGGATTTACTTGAACGCCCGGCTGACGGCTGACAGCCGGGGTAATCTGACGATTTACAGTGTGCCACGCGGGGGTTTTGCCC