Homologs in group_1919

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14280 FBDBKF_14280 82.5 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08000 EHELCC_08000 82.5 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_08325 NLDBIP_08325 82.5 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05940 LHKJJB_05940 82.5 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_04975 HKOGLL_04975 82.5 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
PMI_RS08790 PMI_RS08790 59.0 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1919

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1919

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76241 4.99e-31 119 31 1 221 2 nimR HTH-type transcriptional regulator NimR Escherichia coli (strain K12)
Q8FQS2 3.57e-09 59 38 0 93 3 ripA HTH-type transcriptional regulator RipA Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q8NRR3 1.49e-08 58 37 0 93 2 ripA HTH-type transcriptional regulator RipA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q65Q30 2.65e-08 57 21 5 247 3 rhaR HTH-type transcriptional activator RhaR Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B1JNC4 6.81e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66FF1 8.29e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype I (strain IP32953)
A7FN79 8.29e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TRS7 8.61e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis (strain Pestoides F)
Q1CEB6 8.61e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Nepal516)
A9QYR6 8.61e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Angola)
Q8ZIZ9 8.61e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis
B2K1W6 8.61e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C0W2 8.61e-08 55 24 11 261 3 rhaR HTH-type transcriptional activator RhaR Yersinia pestis bv. Antiqua (strain Antiqua)
B4TPR0 3.63e-07 53 23 9 254 3 rhaR HTH-type transcriptional activator RhaR Salmonella schwarzengrund (strain CVM19633)
B5FPP6 4.54e-07 53 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella dublin (strain CT_02021853)
Q31U83 1.25e-06 52 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Shigella boydii serotype 4 (strain Sb227)
Q8FBD7 1.25e-06 52 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAF7 1.25e-06 52 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZUB8 1.25e-06 52 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O139:H28 (strain E24377A / ETEC)
Q83PD9 1.34e-06 52 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri
Q0SZ96 1.34e-06 52 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Shigella flexneri serotype 5b (strain 8401)
Q6NI56 1.35e-06 52 36 0 85 3 ripA HTH-type transcriptional regulator RipA Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Q57HG7 1.42e-06 52 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella choleraesuis (strain SC-B67)
Q8Z2V5 1.61e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhi
B4TBY4 1.61e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella heidelberg (strain SL476)
B7LVD8 1.87e-06 51 23 6 246 3 rhaS HTH-type transcriptional activator RhaS Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
P40865 2.09e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BJG9 2.09e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain AKU_12601)
A9MZC9 2.09e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PKG1 2.09e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SZZ4 2.09e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella newport (strain SL254)
B5QWY5 2.09e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella enteritidis PT4 (strain P125109)
B5F0N0 2.41e-06 51 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella agona (strain SL483)
Q1R413 3.03e-06 50 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain UTI89 / UPEC)
A1AI83 3.03e-06 50 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O1:K1 / APEC
Q8X7B3 3.72e-06 50 22 7 250 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O157:H7
A4WG90 4.32e-06 50 23 11 282 3 rhaR HTH-type transcriptional activator RhaR Enterobacter sp. (strain 638)
Q32A71 4.61e-06 50 24 2 132 3 rhaR HTH-type transcriptional activator RhaR Shigella dysenteriae serotype 1 (strain Sd197)
P09378 6.43e-06 50 24 2 132 1 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12)
A8A710 6.43e-06 50 24 2 132 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli O9:H4 (strain HS)
C5A074 6.43e-06 50 24 2 132 3 rhaR HTH-type transcriptional activator RhaR Escherichia coli (strain K12 / MC4100 / BW2952)
A9MI63 6.8e-06 49 22 8 250 3 rhaR HTH-type transcriptional activator RhaR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
P45008 1.2e-05 49 31 1 101 4 HI_1052 Uncharacterized HTH-type transcriptional regulator HI_1052 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P19219 1.27e-05 48 25 1 112 1 adaA Bifunctional transcriptional activator/DNA repair enzyme AdaA Bacillus subtilis (strain 168)
P54722 5.17e-05 47 24 10 252 4 yfiF Uncharacterized HTH-type transcriptional regulator YfiF Bacillus subtilis (strain 168)
Q05587 0.000104 46 27 1 107 1 pocR Regulatory protein PocR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0CL08 0.000683 43 34 2 94 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WAC0 0.000683 43 34 2 94 4 hilD Transcriptional regulator HilD Salmonella typhimurium (strain SL1344)
A6TGB0 0.000759 43 32 1 71 3 rhaR HTH-type transcriptional activator RhaR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q9EYV5 0.000798 43 26 4 164 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8FCI6 0.00082 43 26 4 164 3 gadX HTH-type transcriptional regulator GadX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02630
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 554112 - 554885 (strand: 1)
Length 774 (nucleotides) / 257 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1919
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02311 AraC-like ligand binding domain
PF12833 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2207 Transcription (K) K AraC-type DNA-binding domain and AraC-containing proteins

Protein Sequence

MSRKSDVASLGLKDPVTLIFRNELFFADTEFETHRHPFGQLLYVTGGVMEVVVEGPRYLAPTGFCIWIPQGTEHASYNKSCVSFKIIDISPQWVPVLPDTACVIEMTPVFSAVMQDFFRRAIREPQTDEDKRLAQVLTDQLMISRCQPTYLPGTDDKLLAPVLSALERDPADNSSLAQWAVRSFTSERTLSRRCQQKLGMSFSEWRQRLRFLRAVALLQEGRSVQNVALDVGYSSSSAFIAMFSQLAGVTPERFRHQ

Flanking regions ( +/- flanking 50bp)

ATTATTATATATAACGATATCCCGCCAATTTATAGAGAGAATCTGACAAGATGAGCCGTAAGTCGGATGTTGCCTCATTGGGGCTGAAAGATCCCGTAACATTAATCTTCCGTAATGAACTTTTTTTTGCGGATACTGAATTTGAAACCCACCGTCATCCTTTCGGGCAACTGCTGTATGTCACCGGAGGAGTGATGGAGGTGGTTGTTGAAGGGCCGCGCTATCTGGCACCGACCGGGTTCTGTATCTGGATCCCGCAGGGGACGGAGCATGCCAGTTATAATAAAAGTTGTGTTTCATTTAAAATTATCGATATCTCCCCGCAATGGGTGCCGGTACTGCCGGATACTGCGTGCGTGATAGAAATGACGCCGGTATTCAGTGCTGTAATGCAGGATTTTTTCAGACGGGCAATCCGCGAGCCGCAAACTGATGAAGACAAGCGCCTGGCGCAGGTACTGACAGATCAGCTGATGATCTCCCGCTGTCAGCCGACTTATCTGCCGGGTACGGATGATAAGCTGCTTGCGCCGGTTCTCAGTGCGCTGGAGCGTGATCCTGCGGATAATTCCTCTCTGGCACAATGGGCGGTGCGCAGCTTTACCTCTGAGCGCACCTTATCCCGGCGCTGTCAGCAGAAACTGGGCATGTCATTCAGTGAATGGCGCCAGCGTCTGCGTTTTCTGCGGGCGGTTGCACTGTTGCAGGAAGGGCGGAGCGTGCAGAATGTGGCGCTGGATGTCGGTTACAGTTCCTCTTCGGCTTTTATTGCCATGTTCTCTCAATTAGCCGGGGTCACACCGGAACGTTTTCGCCACCAGTGAGTGTTGCAGGATTAATTGCTCTCTTTAGCAACAATCAGTGCGCGGGGCGT