Homologs in group_62

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02505 FBDBKF_02505 84.7 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
FBDBKF_14585 FBDBKF_14585 57.9 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_02975 EHELCC_02975 84.7 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_15390 EHELCC_15390 57.9 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_00485 NLDBIP_00485 84.7 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_15920 NLDBIP_15920 57.9 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_01550 LHKJJB_01550 84.7 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_15920 LHKJJB_15920 57.9 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_01590 HKOGLL_01590 84.7 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_15040 HKOGLL_15040 57.9 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
F4V73_RS07380 F4V73_RS07380 57.6 Morganella psychrotolerans - cupin domain-containing protein
PMI_RS04340 PMI_RS04340 60.6 Proteus mirabilis HI4320 - cupin domain-containing protein

Distribution of the homologs in the orthogroup group_62

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_62

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P27431 7.47e-176 496 63 0 371 1 roxA Ribosomal protein uL16 3-hydroxylase Escherichia coli (strain K12)
P44683 2.6e-44 160 31 10 323 1 HI_0396 Probable ribosomal oxygenase HI_0396 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B5DUH6 1.18e-06 54 32 2 77 3 GA27866 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila pseudoobscura pseudoobscura
B4GUZ2 1.37e-06 53 29 2 84 3 GL12933 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila persimilis
A3KP59 2.54e-06 53 31 2 91 2 riox1 Ribosomal oxygenase 1 Danio rerio
Q5ZMM1 1.56e-05 50 31 6 125 2 RIOX1 Ribosomal oxygenase 1 Gallus gallus
Q16W06 2.48e-05 50 23 11 235 3 AAEL009382 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Aedes aegypti
A5PK74 3.67e-05 49 34 2 72 2 RIOX1 Ribosomal oxygenase 1 Bos taurus
Q9H6W3 3.96e-05 49 34 2 72 1 RIOX1 Ribosomal oxygenase 1 Homo sapiens
D3ZU57 4.71e-05 48 34 1 72 1 Riox1 Ribosomal oxygenase 1 Rattus norvegicus
Q8CFC1 4.73e-05 48 37 5 82 2 Riox2 Ribosomal oxygenase 2 Rattus norvegicus
B4Q068 5.89e-05 48 35 2 77 3 GE16340 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila yakuba
Q9JJF3 6.49e-05 48 34 1 72 1 Riox1 Ribosomal oxygenase 1 Mus musculus
B4I100 7.17e-05 48 36 3 79 3 GM12339 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila sechellia
B4JMQ2 7.6e-05 48 33 1 74 3 GH24285 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila grimshawi
B4R4H1 7.66e-05 48 35 3 79 3 GD16684 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila simulans
B4NP88 7.94e-05 48 33 1 74 3 GK15670 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila willistoni
B3NU20 0.000105 48 35 1 74 3 GG18702 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila erecta
Q54K96 0.000123 47 28 3 114 3 jcdg Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Dictyostelium discoideum
B4M7P8 0.000124 47 31 3 82 3 GJ17031 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila virilis
P46327 0.000153 47 23 8 250 1 yxbC Uncharacterized protein YxbC Bacillus subtilis (strain 168)
B0WMG3 0.000241 47 27 3 107 3 CPIJ008401 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Culex quinquefasciatus
B3MSI4 0.000359 46 33 2 77 3 GF20792 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila ananassae
Q7K4H4 0.00055 45 34 1 76 1 NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Drosophila melanogaster
O01658 0.00063 45 25 10 223 3 jmjc-1 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Caenorhabditis elegans

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02440
Feature type CDS
Gene -
Product cupin domain-containing protein
Location 515816 - 516937 (strand: 1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_62
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF08007 JmjC domain
PF20514 ROXA-like winged helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2850 Translation, ribosomal structure and biogenesis (J) J Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18850 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] - -

Protein Sequence

MADKLNLNWPEFLEKYWQKKPVVLKNAFPDFVDPITPDELAGLAMEPEVDSRLVSLDDGKWQASHGPFEDYSGLGETGWSLLVQAVNHWHMPSAELVRPFRVLPEWRLDDLMISYSVPGGGVGPHIDNYDVFIIQGMGRRRWRVGDAIPMRQFCPHPALLHVDPFEPIIDVEMSPGDILYIPPGFPHDGFTFEDTMNYSVGFRGPNGRDLLSSFADYALEKDLGGVHYSDPDLTVRDSAGIVETHEIERLRAMMVEMINQPGDFEQWFGRFATTARHELDIAPAEPVYLQDEVLSALNAGEHLTRLSGLRVMCIGDSFFINTEAWATADAKGADALCQFTELGINELGDALQNPAFVAELTEFINQGYWYFGE

Flanking regions ( +/- flanking 50bp)

TTACTCCTATAATTCTCGGCTAACTTCCTTATTGATACGAATGTGATTGTATGGCTGACAAATTGAATCTTAACTGGCCTGAATTTTTAGAAAAATACTGGCAAAAAAAACCGGTTGTATTGAAAAATGCATTTCCTGACTTTGTTGATCCTATCACTCCGGATGAGCTGGCAGGTTTGGCAATGGAGCCTGAAGTTGACAGCCGGCTTGTCAGCCTTGACGATGGCAAATGGCAGGCAAGCCATGGTCCCTTTGAGGACTATAGCGGGTTAGGCGAAACGGGTTGGTCATTACTGGTTCAGGCGGTTAACCATTGGCATATGCCATCTGCTGAATTGGTCCGTCCATTTCGGGTGTTGCCTGAGTGGCGTCTTGATGACCTGATGATTTCGTATTCGGTTCCGGGAGGTGGCGTCGGGCCGCATATTGATAACTATGACGTTTTTATTATTCAGGGAATGGGTCGCCGTCGCTGGCGTGTGGGCGATGCAATACCGATGCGCCAGTTCTGTCCGCATCCGGCATTGCTGCATGTCGACCCGTTTGAGCCAATCATTGATGTCGAAATGTCACCGGGTGATATTCTGTATATTCCGCCCGGATTCCCGCACGACGGGTTTACGTTCGAAGACACAATGAACTACTCCGTTGGTTTTCGCGGACCGAACGGGCGTGATTTGCTGAGTAGTTTCGCGGACTATGCGCTGGAAAAAGATTTAGGTGGCGTACATTACAGTGATCCTGACCTGACGGTGCGTGACAGTGCGGGAATTGTGGAAACGCATGAAATTGAGCGACTGCGCGCCATGATGGTTGAGATGATAAATCAGCCGGGTGATTTTGAGCAGTGGTTTGGTCGCTTTGCAACCACCGCCCGCCATGAATTGGATATTGCACCTGCCGAGCCTGTGTATCTGCAGGACGAAGTATTGAGTGCGTTGAATGCCGGTGAACATCTGACCCGCCTGAGCGGCCTGCGTGTAATGTGCATCGGCGATAGCTTCTTTATTAATACAGAAGCCTGGGCTACCGCAGATGCTAAGGGCGCAGACGCACTGTGCCAATTCACCGAACTTGGAATAAACGAATTAGGTGATGCATTACAAAATCCGGCCTTTGTTGCCGAATTAACTGAATTTATCAATCAGGGTTATTGGTACTTCGGCGAATAAAGCGTTTTTTGTCATTGCTACTGTAGTAAAGGTGATCGCTCAGGCGATCA