Homologs in group_3979

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_3979

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3979

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01865
Feature type CDS
Gene -
Product spore coat protein U domain-containing protein
Location 408335 - 409279 (strand: 1)
Length 945 (nucleotides) / 314 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3979
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MILINKGRWLIPVIILFSMPSIADCGNGHITATVTESHVQERVEGEITAGTLLVSDIQQVGNISGCDNNSPEELRLIATQPNTEMSPTFFQMINGAPAYYLNKYYAYTIKMDDTHAYTEKGMSIAAQKRNGIINLPRASVSVYAAVNNPPPLRLSSSQVGIIKNNQHETVAKLKLSANIDTVETCVINNKNIEFDFGELDVSQFTSAIGKTNIRESQTIFVQCTNEKRTKNISIILNGSTTSGRSDKGIIASNNPSIGFVLYYGDKQITENTDTYLGTMQKTFSPAITAYIYKLTRNVEPGKFSAIAEYTIKFN

Flanking regions ( +/- flanking 50bp)

TTTATGGTGATTAATTTAGTTAAGATAAACTATTTTCTCAGAGAGGGAACATGATTTTAATTAATAAGGGTCGCTGGTTAATCCCGGTAATTATATTATTTTCTATGCCTTCCATAGCAGATTGTGGTAATGGACATATTACTGCAACAGTGACTGAGTCTCATGTTCAGGAACGGGTTGAAGGTGAAATTACTGCGGGTACACTGTTGGTGAGCGATATCCAGCAGGTTGGAAACATTTCCGGTTGTGATAATAATTCACCTGAAGAATTAAGGCTGATTGCCACTCAGCCAAACACTGAAATGTCGCCTACGTTTTTTCAGATGATTAATGGCGCCCCGGCATATTATCTTAACAAGTATTATGCTTATACCATTAAAATGGATGATACTCATGCTTATACTGAAAAGGGTATGTCAATTGCAGCTCAAAAACGTAATGGTATCATCAATCTTCCGCGTGCTTCAGTTTCGGTTTATGCAGCTGTGAATAATCCGCCACCGTTGCGATTATCATCGTCTCAGGTTGGTATTATTAAAAATAATCAACATGAAACAGTGGCGAAATTAAAATTATCTGCCAATATTGATACTGTTGAAACCTGTGTGATTAACAATAAAAATATTGAGTTTGATTTTGGTGAGCTGGATGTTTCTCAGTTTACATCTGCTATAGGAAAAACAAATATACGTGAATCACAGACGATTTTTGTTCAATGTACTAATGAAAAACGGACTAAAAATATATCTATTATATTAAATGGTTCCACGACATCCGGACGAAGTGATAAAGGTATCATTGCTTCAAATAATCCGTCTATCGGTTTTGTATTGTACTATGGTGATAAGCAAATTACAGAGAATACAGATACGTATCTGGGGACAATGCAGAAAACATTTAGTCCGGCGATAACGGCATATATTTATAAATTAACCAGGAATGTTGAGCCGGGAAAATTCTCTGCTATCGCAGAATATACAATTAAATTCAATTAAGTGATTTTATAAAAACCGTATTTTTATCAGGTACGGTTTTTATATTCCGG