Homologs in group_103

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11 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS04865 PMI_RS04865 84.6 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS11565 PMI_RS11565 84.8 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS12360 PMI_RS12360 84.1 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS14775 PMI_RS14775 84.3 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS15005 PMI_RS15005 84.8 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS15220 PMI_RS15220 84.4 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS16440 PMI_RS16440 84.6 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS16835 PMI_RS16835 85.1 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS17430 PMI_RS17430 84.7 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS17610 PMI_RS17610 85.1 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein
PMI_RS18460 PMI_RS18460 84.8 Proteus mirabilis HI4320 - RNA-guided endonuclease TnpB family protein

Distribution of the homologs in the orthogroup group_103

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_103

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76102 0.0 705 84 0 400 3 insQ Putative RNA-guided DNA endonuclease InsQ Escherichia coli (strain K12)
P54992 8.08e-65 215 33 9 411 3 None Putative RNA-guided DNA endonuclease Streptomyces pristinaespiralis
Q7DF80 2.07e-58 199 34 10 407 1 tnpB RNA-guided DNA endonuclease TnpB Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q3V4S9 1.25e-28 119 29 7 313 3 None TnpB-like protein ORF409 Acidianus two-tailed virus
P9WL37 1.95e-25 110 26 14 405 3 Rv2885c Putative RNA-guided DNA endonuclease Rv2885c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WL36 1.95e-25 110 26 14 405 3 MT2953 Putative RNA-guided DNA endonuclease MT2953 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A0A2U3D0N8 7.23e-17 85 27 7 232 1 cas12f1 CRISPR-associated endodeoxyribonuclease Cas12f1 Sulfoacidibacillus thermotolerans
P0DW62 2.75e-15 80 26 7 247 1 cas12f1 CRISPR-associated endodeoxyribonuclease Cas12f1 Syntrophomonas palmitatica (strain DSM 18709 / JCM 14374 / NBRC 102128 / MPA)
Q5UPF5 1.9e-09 62 26 5 203 3 MIMI_L79 TnpB-like protein L79 Acanthamoeba polyphaga mimivirus
Q5UQQ9 1.95e-09 62 26 5 203 3 MIMI_R854 TnpB-like protein R854 Acanthamoeba polyphaga mimivirus
Q5UPQ8 2e-09 62 26 5 203 3 MIMI_L770 TnpB-like protein L770 Acanthamoeba polyphaga mimivirus
Q59029 2.58e-07 55 26 9 236 3 MJ1635 TnpB-like protein MJ1635 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q5UPI0 2.62e-06 53 26 4 148 3 MIMI_R104 Putative transposase R104 Acanthamoeba polyphaga mimivirus
O41107 2.84e-06 52 22 18 400 2 A625R Putative transposase A625R Paramecium bursaria Chlorella virus 1
A0A1J4UAV9 8.57e-06 51 24 8 232 1 cas12f2 CRISPR-associated endodeoxyribonuclease Cas12f2 Micrarchaeota archaeon (strain CG1_02_47_40)
Q60328 1.17e-05 49 28 6 132 3 MJ0012 TnpB-like protein MJ0012 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O66401 1.61e-05 50 29 6 146 3 aq_aa05 TnpB-like protein aq_aa05 Aquifex aeolicus (strain VF5)
Q58161 3.02e-05 48 26 5 134 3 MJ0751 TnpB-like protein MJ0751 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
D7BJT1 0.00053 45 24 4 160 1 cas12m CRISPR-associated DNA-binding protein Cas12m Allomeiothermus silvanus (strain ATCC 700542 / DSM 9946 / NBRC 106475 / NCIMB 13440 / VI-R2)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01570
Feature type CDS
Gene -
Product RNA-guided endonuclease TnpB family protein
Location 349983 - 351191 (strand: 1)
Length 1209 (nucleotides) / 402 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_103
Orthogroup size 12
N. genomes 2

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Genomic region

Domains

PF01385 Probable transposase
PF07282 Putative transposase DNA-binding domain
PF12323 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0675 Mobilome: prophages, transposons (X) X Transposase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07496 putative transposase - -

Protein Sequence

MKRLQAFKFRLRPNGQQERDMRRFAGACRFVFNRALALQNENHEAGNKYIPYTKMTSWLIEWKADTDTQWLKEAPSQPLQQSLKDLERAYKNFFHKRAFFPRFKKRGTNDAFRYPQGVKLAQKSSCIFLPKLGWIRYRNSREVPGVVKNVTVSQSCGKWYISIQTEYEQPEAQHDSTSMIGLDAGVTKLATLSDGTVFEPVNSFKTNQKKLTILQRQLSRKVKFSANWQKQKRKIQRLHSHIANIRKDYLHKVTTTLSKNHAMIVIEDLKVSNMSKSAKGTADQHGRNVRAKSGLNRSILDQGWYELRRQLEYKQGWRGGQVLAINPAYTSQKCACCSHTAKENRLSQSKFECQACGYTANADINGARNILAAGHAVLACGGMVQSDHPLKQEPTEMIQTLV

Flanking regions ( +/- flanking 50bp)

CACGGCGACTATCGGTTTTTATTTTCATAGACCAAAGTATAATTGTGAGTATGAAAAGACTACAAGCCTTTAAATTCCGGTTAAGACCAAATGGTCAGCAGGAGCGTGATATGCGACGCTTTGCCGGGGCTTGTCGTTTTGTTTTCAATCGGGCGTTAGCGTTGCAAAATGAAAATCATGAGGCAGGCAATAAGTATATTCCGTACACCAAAATGACCTCGTGGCTTATTGAATGGAAAGCCGATACCGATACACAATGGCTCAAAGAAGCCCCGTCTCAACCGCTTCAGCAGTCCCTTAAAGACCTTGAGCGCGCATACAAAAATTTCTTTCATAAACGAGCCTTTTTTCCCCGTTTCAAAAAAAGAGGTACAAACGATGCTTTTCGCTATCCGCAGGGCGTTAAGCTAGCTCAGAAAAGCAGCTGTATTTTCCTGCCAAAACTAGGTTGGATACGCTATCGCAACAGTCGTGAAGTCCCGGGCGTTGTAAAAAATGTCACGGTCAGCCAGTCATGCGGCAAATGGTACATCAGCATCCAGACAGAGTACGAACAGCCAGAGGCACAGCACGACTCAACGTCAATGATTGGATTGGATGCAGGTGTAACAAAGCTCGCCACGCTGTCAGACGGAACTGTGTTTGAGCCGGTAAACAGTTTTAAAACCAACCAGAAAAAATTAACAATACTCCAGCGGCAGTTAAGCCGAAAAGTGAAATTCAGTGCCAACTGGCAAAAGCAGAAACGAAAAATCCAACGACTACATTCCCATATTGCCAATATTCGCAAGGACTACCTTCACAAAGTCACTACGACACTCAGCAAAAACCACGCAATGATTGTCATTGAGGACTTGAAGGTTAGTAATATGTCGAAATCAGCAAAAGGCACAGCAGATCAACACGGTCGCAATGTGCGGGCAAAATCAGGTCTGAATCGCTCAATACTGGATCAGGGTTGGTATGAACTCCGCCGTCAACTTGAGTACAAACAAGGATGGCGGGGAGGTCAGGTATTAGCGATAAACCCCGCCTATACGAGCCAGAAATGCGCCTGTTGTAGTCATACAGCGAAAGAAAACCGCCTGTCGCAAAGCAAATTTGAGTGTCAGGCGTGCGGATATACCGCGAATGCCGATATCAACGGTGCACGTAATATTTTAGCGGCAGGGCATGCCGTACTCGCCTGTGGAGGAATGGTGCAGTCAGACCATCCGTTGAAGCAGGAACCCACTGAAATGATTCAGACTTTGGTCTGAACGTAGTAGGAATCCATGTCCTTTAGGACATGGAGGATGTCAAGAACCGG