Homologs in group_77

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12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20045 FBDBKF_20045 27.3 Morganella morganii S1 sfmF fimbria assembly protein
EHELCC_03485 EHELCC_03485 27.3 Morganella morganii S2 sfmF fimbria assembly protein
NLDBIP_03485 NLDBIP_03485 27.3 Morganella morganii S4 sfmF fimbria assembly protein
LHKJJB_09315 LHKJJB_09315 27.3 Morganella morganii S3 sfmF fimbria assembly protein
HKOGLL_09660 HKOGLL_09660 27.3 Morganella morganii S5 sfmF fimbria assembly protein
F4V73_RS00870 F4V73_RS00870 21.2 Morganella psychrotolerans - fimbrial protein
F4V73_RS01055 F4V73_RS01055 23.7 Morganella psychrotolerans - fimbrial protein
F4V73_RS01665 F4V73_RS01665 27.3 Morganella psychrotolerans sfmF fimbria assembly protein
F4V73_RS09370 F4V73_RS09370 21.7 Morganella psychrotolerans - fimbrial protein
F4V73_RS09385 F4V73_RS09385 21.5 Morganella psychrotolerans - fimbrial protein
F4V73_RS10910 F4V73_RS10910 21.7 Morganella psychrotolerans - fimbrial protein
F4V73_RS12590 F4V73_RS12590 21.7 Morganella psychrotolerans - fimbrial protein

Distribution of the homologs in the orthogroup group_77

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_77

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75860 9.95e-17 76 30 7 175 2 ycbV Uncharacterized fimbrial-like protein YcbV Escherichia coli (strain K12)
P77789 6.3e-12 63 27 6 177 3 ydeS Uncharacterized fimbrial-like protein YdeS Escherichia coli (strain K12)
P08189 4.33e-09 56 24 3 169 1 fimF Protein FimF Escherichia coli (strain K12)
P39264 1.44e-08 54 25 5 176 1 fimI Fimbrin-like protein FimI Escherichia coli (strain K12)
P37921 3.66e-08 53 29 7 155 1 fimA Type-1 fimbrial protein, A chain Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P55223 2.55e-07 51 28 7 155 3 None Fimbrial subunit type 1 Salmonella typhimurium
P37920 4.8e-07 50 30 9 157 3 fimA Type-1 fimbrial protein, A chain Salmonella typhi
P13429 8.82e-07 49 27 5 158 1 sfaG S-fimbrial protein subunit SfaG Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P21413 8.2e-06 47 23 5 138 3 fasA Fimbrial protein 987P Escherichia coli
P75859 3.65e-05 45 26 6 152 2 ycbU Uncharacterized fimbrial-like protein YcbU Escherichia coli (strain K12)
P37922 0.000178 43 23 6 157 3 fimI Fimbrin-like protein FimI Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39834 0.000203 43 25 7 168 3 ygiL Uncharacterized fimbrial-like protein YgiL Escherichia coli (strain K12)
Q08456 0.000246 43 23 6 157 5 fimI Putative fimbrin-like protein FimI Salmonella typhi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01060
Feature type CDS
Gene -
Product fimbrial protein
Location 227055 - 227558 (strand: 1)
Length 504 (nucleotides) / 167 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_77
Orthogroup size 13
N. genomes 6

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MRYLYLLFMLMVMFTSAGYANVVKIKGKILSNVCAVSVPDALIDMKSVSVKELQARSRGQFIPFTIHLINCGSDVSGVSVELQGERDNANTDLLKVPQSINGATGVAIAFYDDKQRVLPLFSQSDIFPLVANINEKKLPLQVRYETNGDVLKPGRADSTATLILHYN

Flanking regions ( +/- flanking 50bp)

TGCCTCTGCCATTATGTATTTTGATATTATATATCAGTAAGGGGAGTAGTATGCGTTATTTATACCTTTTATTTATGTTAATGGTGATGTTCACTTCAGCCGGATATGCGAATGTAGTAAAGATAAAGGGCAAGATACTGAGTAATGTTTGTGCTGTCTCAGTACCTGATGCTCTTATTGATATGAAAAGTGTTTCAGTAAAAGAATTACAGGCACGTAGCCGCGGGCAGTTTATTCCCTTTACTATCCACTTAATTAATTGCGGTAGTGATGTCAGTGGTGTTTCTGTTGAACTTCAGGGAGAGCGGGATAATGCTAATACTGATTTACTCAAAGTTCCGCAAAGTATAAATGGTGCAACCGGGGTTGCTATTGCTTTTTATGACGATAAACAACGCGTATTACCACTTTTCAGCCAAAGTGATATTTTTCCTTTAGTTGCAAATATAAATGAAAAAAAATTACCGCTCCAGGTTCGCTATGAAACAAACGGAGATGTGCTGAAACCCGGGAGGGCTGATAGTACCGCAACATTAATTCTGCATTACAACTGATGATGGTTTATATGAAAGTATATGTTTTTTTCTGCCTCAGTTTATTCATT