Homologs in group_1172

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06750 FBDBKF_06750 96.1 Morganella morganii S1 codB cytosine permease
EHELCC_04220 EHELCC_04220 96.1 Morganella morganii S2 codB cytosine permease
NLDBIP_04220 NLDBIP_04220 96.1 Morganella morganii S4 codB cytosine permease
LHKJJB_10050 LHKJJB_10050 96.1 Morganella morganii S3 codB cytosine permease
HKOGLL_08925 HKOGLL_08925 96.1 Morganella morganii S5 codB cytosine permease
PMI_RS07055 PMI_RS07055 86.3 Proteus mirabilis HI4320 codB cytosine permease

Distribution of the homologs in the orthogroup group_1172

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1172

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AA82 0.0 648 81 1 414 1 codB Cytosine permease Escherichia coli (strain K12)
P0AA83 0.0 648 81 1 414 3 codB Cytosine permease Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X691 0.0 647 81 1 414 3 codB Cytosine permease Escherichia coli O157:H7
D6R8X8 1.79e-10 66 24 12 394 1 hyuP Hydantoin permease Microbacterium liquefaciens
Q01266 0.000313 45 25 4 197 3 None Uncharacterized protein in hyuC 3'region (Fragment) Pseudomonas sp. (strain NS671)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00900
Feature type CDS
Gene codB
Product cytosine permease
Location 190792 - 192039 (strand: 1)
Length 1248 (nucleotides) / 415 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1172
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1457 Nucleotide transport and metabolism (F) F Purine-cytosine permease or related protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10974 cytosine permease - -

Protein Sequence

MSGDKNYSHGPVPISARKGGLALTFVMLGLTFFSASMWTGGALGTGLSFNDFFLAVLIGNLLLGIYTAFLGFIGSKTGLTTHLLARYSFGIKGSWLPSFLLGGTQIGWFGVGVAMFAIPVGKATGWDINWLIGISGVLMTITVFFGISALTVLSVIAVPAIAALGSYSVYLAVTGMGGLSVLRDIIPAQPLDFNLALAMVVGSFVSAGTLTADFVRFGRKPKIAVLVAIVAFFLGNSLMFIFGAAGAASLGMADISDVMIAQGLLLPAIIVLGLNIWTTNDNALYASGLGFANITGLSSKTLSIVNGLIGTLCALWLYNNFVGWLTFLSAAIPPIGGIIIADYLMYRHRYATYDCSKMRDVNISALLAMAAGIIAGHWLPGIVPVNAVIGGALSYAVLNPLLNRRRTTHPEMTRA

Flanking regions ( +/- flanking 50bp)

ATAATATCCGTCCGATTTTTTTTGTCTGAGAAAAGCAACAGGAGGCAATTGTGTCCGGGGATAAAAATTACAGTCATGGGCCTGTGCCCATATCCGCGAGAAAAGGCGGTCTGGCATTAACCTTTGTAATGCTGGGATTAACGTTCTTTTCCGCCAGTATGTGGACCGGAGGTGCTCTCGGTACCGGTCTCAGTTTTAATGATTTCTTCCTCGCAGTACTTATCGGTAATCTTCTTCTTGGTATTTACACCGCTTTTCTTGGTTTTATCGGTTCCAAAACCGGCCTCACAACTCATCTTCTCGCGCGTTACTCCTTCGGTATTAAAGGCTCCTGGCTCCCTTCATTCTTACTCGGCGGCACACAAATCGGCTGGTTTGGTGTGGGTGTGGCGATGTTTGCCATCCCGGTGGGTAAAGCAACCGGCTGGGATATCAACTGGCTTATCGGAATTTCCGGCGTGCTGATGACCATCACCGTATTCTTCGGAATTTCTGCACTGACTGTACTTTCGGTGATTGCGGTACCGGCGATTGCGGCTCTCGGCAGTTACTCAGTCTATCTGGCGGTAACGGGCATGGGCGGTCTGAGCGTTCTGCGGGATATCATCCCTGCGCAGCCGTTGGATTTTAATCTGGCACTTGCCATGGTGGTCGGTTCGTTTGTCAGCGCGGGCACGTTAACCGCTGATTTTGTCCGCTTCGGACGTAAACCGAAAATAGCGGTATTGGTTGCGATTGTTGCATTTTTCCTTGGTAACTCACTGATGTTTATCTTTGGTGCGGCGGGCGCGGCATCCCTGGGAATGGCGGATATCTCTGATGTGATGATCGCCCAGGGATTACTGTTACCGGCCATTATTGTGCTGGGGCTGAATATCTGGACGACCAACGACAACGCACTTTATGCATCCGGTCTGGGATTTGCCAATATTACCGGGCTTTCCAGCAAGACCCTCTCGATTGTGAACGGGCTTATCGGCACACTGTGCGCACTGTGGCTCTATAATAACTTTGTCGGCTGGCTGACATTCCTTTCCGCTGCGATCCCGCCAATCGGAGGGATTATTATCGCGGATTACTTAATGTACCGTCACCGTTACGCGACCTATGATTGCAGTAAAATGCGTGATGTGAATATCAGTGCTTTACTGGCTATGGCGGCAGGGATTATTGCCGGACACTGGTTGCCGGGAATAGTACCGGTAAATGCAGTTATCGGCGGCGCATTAAGTTATGCTGTGCTTAATCCGTTACTGAATCGTCGTCGCACAACCCATCCGGAGATGACCCGTGCTTAATCAAACTATAAAACATATTCATAATATTCGTCTGCCTGAGCGTGATGGTT