Homologs in group_2708

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06715 FBDBKF_06715 52.8 Morganella morganii S1 - Molecular chaperone
EHELCC_04255 EHELCC_04255 52.8 Morganella morganii S2 - Molecular chaperone
NLDBIP_04255 NLDBIP_04255 52.8 Morganella morganii S4 - Molecular chaperone
LHKJJB_10085 LHKJJB_10085 52.8 Morganella morganii S3 - Molecular chaperone
HKOGLL_08890 HKOGLL_08890 52.8 Morganella morganii S5 - Molecular chaperone

Distribution of the homologs in the orthogroup group_2708

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2708

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21646 9.37e-92 272 54 0 233 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P35757 3.67e-43 149 36 6 231 3 hifB Chaperone protein HifB Haemophilus influenzae
P45991 8.69e-43 147 36 7 232 3 hifB Chaperone protein HifB Haemophilus influenzae
P33409 4.54e-41 143 35 6 219 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P33342 1.91e-40 141 33 5 226 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P33128 1.1e-38 137 34 5 226 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P77249 1.28e-29 113 35 9 227 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
Q8X5K6 4.09e-28 109 33 7 225 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P37923 5.07e-27 106 35 8 222 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P62609 9.71e-27 105 30 7 228 1 focC Chaperone protein FocC Escherichia coli
P62610 9.71e-27 105 30 7 228 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P53520 4.84e-26 104 30 9 230 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P43661 1.78e-24 100 31 7 221 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P15319 8.89e-24 98 29 8 230 1 papD Chaperone protein PapD Escherichia coli
P59590 1.67e-22 95 28 7 221 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31697 9.53e-22 93 28 7 221 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P42914 6.57e-21 90 32 9 221 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P69966 9.49e-21 91 31 6 177 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 9.49e-21 91 31 6 177 3 psaB Chaperone protein PsaB Yersinia pestis
P75856 2.26e-20 89 30 8 208 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
Q8X5E4 6.81e-20 87 30 7 203 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P77599 3.9e-19 86 26 6 206 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P25402 4.01e-19 85 29 5 182 3 fanE Chaperone protein FanE Escherichia coli
P75749 8.99e-18 82 28 8 206 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P25401 2.86e-17 81 26 10 231 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 7.95e-17 80 25 10 231 3 clpE Chaperone protein ClpE Escherichia coli
P53516 3.85e-15 75 27 7 199 3 afaB Chaperone protein AfaB Escherichia coli
P33407 1.1e-14 74 29 8 189 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P77616 1.13e-14 74 29 11 218 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P26926 2.63e-13 70 29 7 193 1 caf1M Chaperone protein caf1M Yersinia pestis
P53519 7.52e-13 68 26 9 216 3 cssC Chaperone protein CssC Escherichia coli
P46738 8.53e-13 68 26 7 199 3 nfaE Chaperone protein NfaE Escherichia coli
P40876 2.2e-12 67 25 6 223 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P46004 6.74e-12 66 26 8 213 3 aggD Chaperone protein AggD Escherichia coli
P42183 1.91e-08 54 31 2 99 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli
P33387 2.62e-06 50 26 5 161 3 sefB Chaperone protein SefB Salmonella enteritidis
P15483 5.69e-05 46 24 5 171 3 None Chaperone protein CS3-1 Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00865
Feature type CDS
Gene -
Product molecular chaperone
Location 181883 - 182584 (strand: -1)
Length 702 (nucleotides) / 233 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2708
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Protein Sequence

MKKYLLLTLFFIGFFTSADNIVVNGTRFIYPESEKEITIQISNLADRPAIAQIWLDTGDSTVLPENITTPFQITPPISRVNAKGGQTLRIKLIDKAGIATDRETLWWLNILDIPPVNKEAMKDGKNVLQLAIRSRFKLFYRPTGLGNRDNATEQLTFSAKGNAIEINNKSPFHITVTAITLSDKKQLIKKSFMLLPKDRTEIPVNRSVKRGDKLFISNINDYGSDLTFNATLE

Flanking regions ( +/- flanking 50bp)

TATCGTTTGTTCAGATGGTGTGAATAACACCATCTGATTCCGGAGCTAAAATGAAAAAATACTTACTTTTAACCTTATTTTTTATTGGTTTCTTTACTTCAGCCGATAATATCGTTGTTAACGGAACACGTTTTATTTATCCGGAAAGCGAAAAAGAGATTACCATACAAATAAGTAATTTAGCAGACCGCCCGGCAATTGCACAAATATGGCTTGATACCGGTGATTCAACCGTTCTTCCTGAAAATATTACCACACCATTTCAGATTACCCCGCCTATTTCCCGCGTCAATGCAAAGGGAGGGCAGACACTACGAATAAAACTGATCGATAAAGCAGGTATTGCGACCGACAGAGAAACCTTGTGGTGGCTTAATATACTGGATATTCCGCCCGTTAATAAAGAAGCCATGAAAGACGGAAAAAATGTATTACAACTGGCGATACGTTCCAGATTTAAATTATTTTACCGGCCAACAGGTCTTGGTAACCGGGATAACGCGACGGAACAATTAACTTTTTCAGCTAAAGGCAACGCAATAGAGATAAATAATAAATCTCCATTTCATATTACTGTGACAGCAATCACTTTAAGCGATAAAAAACAACTTATTAAAAAATCATTTATGCTGTTACCAAAAGACCGGACAGAAATACCGGTAAACAGATCAGTAAAACGCGGAGATAAACTCTTTATCAGTAATATTAACGATTACGGTTCCGATCTTACCTTTAACGCAACTTTAGAATAGATACTAATTCAACATGTTAAATATAAGTATAAAAACCATAATAATCGATT