Homologs in group_1480

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09555 FBDBKF_09555 91.3 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_04355 EHELCC_04355 91.3 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_04355 NLDBIP_04355 91.3 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_14275 LHKJJB_14275 91.3 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_12260 HKOGLL_12260 91.3 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
PMI_RS03035 PMI_RS03035 78.0 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_1480

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1480

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ2 0.0 551 70 0 371 1 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli (strain K12)
P0AFQ3 0.0 551 70 0 371 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ4 0.0 551 70 0 371 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O157:H7
P37624 1.03e-43 165 32 5 345 1 rbbA Ribosome-associated ATPase Escherichia coli (strain K12)
P0AFQ1 1.73e-39 147 28 4 335 3 ybhR Probable multidrug ABC transporter permease YbhR Shigella flexneri
P0AFP9 1.73e-39 147 28 4 335 1 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli (strain K12)
P0AFQ0 1.73e-39 147 28 4 335 3 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli O157:H7
P0AGH2 1.8e-14 77 24 10 383 3 yhhJ Inner membrane transport permease YhhJ Shigella flexneri
P0AGH1 1.8e-14 77 24 10 383 1 yhhJ Inner membrane transport permease YhhJ Escherichia coli (strain K12)
P94442 7.29e-13 72 22 9 389 1 lnrN Linearmycin resistance permease protein LnrN Bacillus subtilis (strain 168)
Q8T674 1.86e-10 66 21 11 400 3 abcG20 ABC transporter G family member 20 Dictyostelium discoideum
Q55EH8 5.72e-07 55 21 8 326 3 abcG23 ABC transporter G family member 23 Dictyostelium discoideum

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00810
Feature type CDS
Gene -
Product ABC transporter permease
Location 167165 - 168313 (strand: -1)
Length 1149 (nucleotides) / 382 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1480
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K25181 drug efflux transport system permease protein - -

Protein Sequence

MNTQSATPSGFSWRRLRALCIKESKQIIRDPSSALIAIVIPLILLFIFGYGINLDSSKLRIGILVNQQSEPAQELIHAFTGSPFIDATLSDNRHELIDKLQAGHIRGIVVIPVDFDKRLARQDDIAPIQIITDGSEPNTANFMQGYATGVWQVWKQQRAQDAGISSPPLIDIRLRYWFNPAAISQHFIIPGAISIIITVVGAILTSLVIAREWERGTMEALLSTQVTKTELLLSKLLPYQVLGSFVMVLCMLVTVYLLGVPYHGSLWLLALVTSLYLATALGMGLLISTITRNQFNAAMISLNAAFLPAIMLSGFVFEIDSMPLAVQAVTRVIPARYFVESLQTLFLAGNIMPVIIANLIMLILSAIVFIGLTALKTRRRLD

Flanking regions ( +/- flanking 50bp)

ATCGGGCTGGTCGAACAATATGATAAAGAGCACACACCGGAGGACGTATCATGAATACACAATCTGCCACACCTTCCGGTTTTTCATGGCGCCGCCTGCGGGCGTTATGCATTAAAGAGAGCAAACAGATTATCCGTGACCCGTCCAGCGCCCTGATAGCGATTGTTATTCCGCTGATTTTACTGTTTATTTTTGGCTATGGTATTAATCTGGACTCCTCAAAACTGCGCATCGGTATCCTGGTTAATCAACAAAGTGAACCGGCGCAGGAGCTTATCCACGCCTTTACCGGCTCACCCTTTATTGATGCCACCCTCAGTGATAACCGCCATGAATTGATTGATAAACTTCAGGCCGGGCATATCCGAGGCATTGTGGTGATCCCGGTAGATTTTGATAAGCGTCTTGCCCGTCAGGATGATATCGCGCCGATTCAGATAATCACGGACGGCAGCGAGCCGAATACCGCTAACTTTATGCAGGGCTACGCCACCGGTGTCTGGCAGGTCTGGAAACAGCAACGCGCGCAGGATGCGGGGATCAGCAGCCCGCCCCTGATAGATATCCGCCTGCGCTACTGGTTTAACCCCGCCGCCATCAGTCAGCATTTTATTATCCCGGGCGCTATCAGCATTATTATTACCGTGGTCGGCGCAATTCTGACCTCTCTGGTGATCGCCCGTGAGTGGGAGCGCGGCACCATGGAAGCGCTGCTCTCCACACAAGTAACGAAAACAGAGCTGTTGCTGTCCAAATTGCTGCCGTATCAGGTGCTCGGCAGCTTTGTGATGGTGCTTTGCATGCTGGTGACCGTTTATCTGCTCGGCGTGCCCTACCATGGCTCGTTGTGGCTGCTGGCACTGGTGACCTCGCTTTATCTCGCCACCGCACTCGGCATGGGGCTTCTCATCTCCACCATTACCCGCAATCAGTTCAATGCAGCGATGATCTCCCTGAATGCCGCATTTTTACCCGCGATAATGTTGTCCGGCTTTGTGTTTGAAATCGACAGTATGCCGCTTGCCGTGCAAGCCGTGACCCGGGTAATACCGGCGCGCTATTTTGTCGAAAGCCTGCAAACTCTCTTTCTGGCGGGCAATATCATGCCGGTGATTATCGCCAATCTGATCATGCTGATTTTGTCCGCCATTGTGTTTATCGGGCTGACAGCACTGAAAACCCGCCGCCGGCTGGATTAAGGAGAAAACAATGTTTCACCGGATTTTCACCTTAATTATTAAAGAATTAC