Homologs in group_1499

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09675 FBDBKF_09675 93.2 Morganella morganii S1 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
EHELCC_04475 EHELCC_04475 93.2 Morganella morganii S2 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
NLDBIP_04475 NLDBIP_04475 93.2 Morganella morganii S4 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
LHKJJB_14155 LHKJJB_14155 93.2 Morganella morganii S3 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
HKOGLL_12380 HKOGLL_12380 93.2 Morganella morganii S5 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
PMI_RS00220 PMI_RS00220 78.3 Proteus mirabilis HI4320 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase

Distribution of the homologs in the orthogroup group_1499

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1499

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P26265 0.0 985 71 0 639 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P08331 0.0 976 70 0 639 1 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Escherichia coli (strain K12)
P53052 0.0 968 70 0 634 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Yersinia enterocolitica
P44764 0.0 790 57 1 642 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O34313 5.6e-176 542 45 10 599 1 yfkN Trifunctional nucleotide phosphoesterase protein YfkN Bacillus subtilis (strain 168)
O34313 4.18e-11 70 23 23 566 1 yfkN Trifunctional nucleotide phosphoesterase protein YfkN Bacillus subtilis (strain 168)
A9BJC1 3.99e-20 97 23 17 510 1 mggB Mannosylglucosyl-3-phosphoglycerate phosphatase Petrotoga mobilis (strain DSM 10674 / SJ95)
P22848 2.14e-19 95 23 17 500 3 nutA 5'-nucleotidase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8DFG4 9.99e-19 93 24 19 502 3 nutA 5'-nucleotidase Vibrio vulnificus (strain CMCP6)
P07024 1.07e-18 93 22 19 578 1 ushA Protein UshA Escherichia coli (strain K12)
P06196 2.93e-17 89 22 19 554 3 ushA Silent protein UshA(0) Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9KQ30 1.34e-16 87 22 16 499 3 nutA 5'-nucleotidase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q56878 5.39e-16 85 23 21 564 3 ushA Protein UshA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q9RN37 5.77e-14 78 21 19 554 3 ushA Protein UshA Salmonella pullorum
P54602 6.49e-11 69 24 8 301 1 yhcR Endonuclease YhcR Bacillus subtilis (strain 168)
F8S0Z7 9.11e-10 65 23 17 366 1 None Snake venom 5'-nucleotidase Crotalus adamanteus
B6EWW8 9.68e-10 65 23 17 366 2 None Snake venom 5'-nucleotidase Gloydius brevicauda
B3A0N5 3.13e-09 63 21 23 584 1 APY Apyrase Tabanus yao
O83142 3.79e-09 63 22 24 534 3 TP_0104 Probable 5'-nucleotidase Treponema pallidum (strain Nichols)
A0A2I4HXH5 7.35e-08 59 22 13 355 1 None Snake venom 5'-nucleotidase (Fragment) Naja atra
Q8YAJ5 1.59e-07 58 27 5 177 1 lmo0130 Cell wall protein Lmo0130 Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q9XZ43 4.53e-07 56 23 9 250 1 5NUC Protein 5NUC Lutzomyia longipalpis
P52307 2.61e-06 54 23 8 243 1 None Protein 5NUC (Fragment) Rhipicephalus microplus
P29240 5.42e-06 53 28 11 228 2 None 5'-nucleotidase Diplobatis ommata
P21588 3.23e-05 50 25 8 225 1 Nt5e 5'-nucleotidase Rattus norvegicus
Q61503 3.31e-05 50 24 13 298 1 Nt5e 5'-nucleotidase Mus musculus
P44569 8.29e-05 49 23 21 490 1 HI_0206 NAD 5'-nucleotidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q05927 0.000308 47 25 8 215 1 NT5E 5'-nucleotidase Bos taurus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00665
Feature type CDS
Gene -
Product bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
Location 138886 - 140838 (strand: 1)
Length 1953 (nucleotides) / 650 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1499
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00149 Calcineurin-like phosphoesterase
PF02872 5'-nucleotidase, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0737 Nucleotide transport and metabolism (F)
Defense mechanisms (V)		 FV 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] Purine metabolism
Pyrimidine metabolism
Metabolic pathways		 -

Protein Sequence

MVRNTLKYSVLALLVSGTVNAATVDLRVMETSDIHSNLIDFDYFKDKPTEQFGLVRTAGLIKAAKNEVINSVLVDNGDLIQGSPLADYMVNKGLNKGEAHPAHKLMNTMGYTVGNFGNHEFNFGLDYLKKAISGADFPYVNANVIDAKTGKNVFTPYIIVDTPVKDRDGKEHTLKIGYIGFVPPQILIWDKANLEGKVQVNDITETAKKLVPQMKAEGADIIVAIPHSGFSQEPYKAMAENSVYYLSEVPGINAIMFGHSHGVFPGKEFADIKGVNITDGTVNGIPAVMPGQWGDHLGVVDMVLNNDDGSWKVTQAKSQARPIFDKINKKPLVARDDKLASVIDEQHNATREFVGKLIGKSPDNMYSYLALLQSDPTVQIVNNAQTDYTRRFIQGDPDLADLPVLSAAAPFKVGGRKNAPADFVEVEKGDMTFRNAADLYLYPNTLVVVKATGAEVTEWLECSAGMFNQIDPQSDAPQSLVNWDGFRTYNFDTLSGINYQIDLTQPAKYDVDCQSVNPQANRIKNVTYQGKPIDPKAIFLVATNNYRAYSGKFAGTGDDHIAFASPDENRSVLAAYIAAETKEKGAVSAQAEQNWTFVPIKTDKTLNIRFETSPGDKATQFIKENAHYPMTRTGTDDVGFAVYQVDLKAK

Flanking regions ( +/- flanking 50bp)

AACGGGCGGACACAGATAAAAGCTATCTCAGTTAACCGAAAGAGGATGTTATGGTCAGGAATACATTGAAATATTCGGTATTAGCGCTGCTTGTCAGCGGTACGGTCAATGCCGCGACAGTAGATTTACGGGTGATGGAAACCTCTGATATTCACAGTAATTTAATTGATTTTGATTATTTTAAAGATAAACCGACAGAACAGTTTGGATTAGTGCGTACCGCCGGGTTGATTAAAGCGGCAAAAAATGAAGTTATTAACTCGGTATTAGTGGATAACGGGGATTTAATTCAGGGCAGCCCGCTGGCAGATTACATGGTAAATAAAGGGCTGAATAAGGGTGAAGCGCATCCCGCTCATAAATTAATGAATACCATGGGATATACGGTCGGTAACTTTGGTAATCATGAATTTAATTTCGGGCTGGATTACCTGAAAAAAGCCATTAGCGGCGCAGATTTTCCGTATGTTAATGCCAATGTGATTGATGCAAAAACCGGTAAAAATGTATTTACGCCTTATATTATTGTTGATACCCCGGTAAAAGACAGAGACGGAAAAGAGCATACACTGAAAATAGGTTATATCGGGTTTGTACCGCCGCAAATTCTTATCTGGGATAAAGCCAACCTGGAAGGGAAAGTACAGGTTAATGATATTACCGAAACGGCTAAAAAATTAGTCCCGCAAATGAAAGCGGAAGGTGCAGATATTATCGTTGCTATTCCACACTCGGGTTTCTCGCAGGAGCCCTATAAAGCAATGGCAGAAAACTCGGTTTATTATCTCAGCGAAGTCCCGGGAATTAATGCCATTATGTTTGGTCATTCTCACGGCGTATTTCCCGGAAAAGAATTTGCGGATATTAAAGGTGTGAATATAACAGACGGCACTGTCAATGGTATTCCGGCGGTGATGCCCGGTCAGTGGGGCGATCATCTGGGTGTTGTTGATATGGTGCTGAATAATGATGACGGCAGTTGGAAAGTCACACAGGCTAAATCACAAGCGCGCCCAATCTTTGATAAAATAAATAAAAAACCGCTGGTCGCGCGTGATGACAAACTGGCATCGGTTATTGATGAACAACATAACGCGACGCGTGAATTTGTCGGCAAATTAATCGGTAAATCACCGGATAATATGTACAGCTATCTTGCGCTGTTACAGAGTGACCCGACAGTGCAGATTGTGAATAATGCACAGACTGACTATACACGCCGCTTTATTCAGGGTGATCCTGATCTGGCTGATTTACCGGTACTTTCTGCCGCTGCACCATTTAAAGTGGGTGGACGTAAGAATGCGCCTGCTGACTTTGTTGAGGTAGAAAAAGGGGATATGACCTTCCGTAATGCGGCAGATCTTTATCTTTATCCCAACACGCTGGTGGTGGTGAAAGCTACGGGTGCTGAAGTAACCGAGTGGCTGGAGTGCTCCGCAGGCATGTTCAACCAGATTGATCCGCAGTCAGACGCGCCTCAGAGTCTGGTTAACTGGGATGGTTTCCGCACCTATAATTTCGATACTCTTTCCGGGATCAATTACCAGATAGACCTGACACAGCCGGCTAAATATGATGTCGATTGTCAGTCAGTCAACCCGCAGGCAAATCGCATTAAAAACGTGACATATCAGGGTAAACCGATTGATCCGAAAGCAATTTTCCTGGTAGCAACCAATAATTACCGCGCATACAGCGGCAAGTTCGCGGGAACAGGCGATGATCATATTGCGTTTGCTTCTCCGGATGAAAACCGCAGCGTGCTGGCGGCGTATATTGCAGCTGAAACCAAAGAAAAAGGCGCGGTATCGGCACAGGCAGAGCAAAACTGGACATTTGTACCGATCAAAACGGACAAGACATTAAATATTCGTTTTGAAACCTCGCCGGGGGATAAAGCCACGCAATTTATTAAAGAGAATGCCCATTATCCGATGACCCGCACCGGCACAGATGATGTAGGTTTTGCTGTTTATCAGGTTGATTTAAAAGCGAAGTAAGTCATCACTGACAAAAAAGCCGCCCATTAACTGAGGCGGCTTTTCTATCT