Homologs in group_1528

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09865 FBDBKF_09865 85.7 Morganella morganii S1 - DUF2517 domain-containing protein
EHELCC_04665 EHELCC_04665 85.7 Morganella morganii S2 - DUF2517 domain-containing protein
NLDBIP_04665 NLDBIP_04665 85.7 Morganella morganii S4 - DUF2517 domain-containing protein
LHKJJB_13965 LHKJJB_13965 85.7 Morganella morganii S3 - DUF2517 domain-containing protein
HKOGLL_12570 HKOGLL_12570 85.7 Morganella morganii S5 - DUF2517 domain-containing protein
PMI_RS02730 PMI_RS02730 63.2 Proteus mirabilis HI4320 - YbfA family protein

Distribution of the homologs in the orthogroup group_1528

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1528

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAU4 7.83e-22 82 60 0 61 3 ybfA Uncharacterized protein YbfA Shigella flexneri
P0AAU2 7.83e-22 82 60 0 61 3 ybfA Uncharacterized protein YbfA Escherichia coli (strain K12)
P0AAU3 7.83e-22 82 60 0 61 3 ybfA Uncharacterized protein YbfA Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00480
Feature type CDS
Gene -
Product YbfA family protein
Location 102010 - 102222 (strand: 1)
Length 213 (nucleotides) / 70 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1528
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF10725 Protein of unknown function (DUF2517)

Protein Sequence

MSTYQTYPLHKVLLRRTGVVTLGILAFPFMLFYRDRARFWSYLYRVWSKTSNKPVWLARSEMTLNSGQQH

Flanking regions ( +/- flanking 50bp)

ACATTCAGGATTAGCGCATTTCGCGATAATCCGTAAAAAGGGGGGACTCAATGTCAACATATCAAACATATCCGTTGCATAAGGTTCTCTTGCGCCGTACCGGTGTAGTCACTTTAGGTATCCTGGCGTTCCCGTTTATGTTGTTTTACCGGGATCGCGCCCGCTTCTGGAGTTATCTGTATCGTGTGTGGTCCAAGACGAGCAATAAGCCTGTCTGGCTGGCCCGTTCAGAAATGACTCTGAACAGCGGACAACAGCACTGATACCGGCAGGTTAACCGGCGGCAGTAAAGAGGCGCCCGGCGATATTATCG