Homologs in group_1550

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10040 FBDBKF_10040 88.0 Morganella morganii S1 lptE LPS assembly lipoprotein LptE
EHELCC_04840 EHELCC_04840 88.0 Morganella morganii S2 lptE LPS assembly lipoprotein LptE
NLDBIP_04840 NLDBIP_04840 88.0 Morganella morganii S4 lptE LPS assembly lipoprotein LptE
LHKJJB_13790 LHKJJB_13790 88.0 Morganella morganii S3 lptE LPS assembly lipoprotein LptE
HKOGLL_12745 HKOGLL_12745 88.0 Morganella morganii S5 lptE LPS assembly lipoprotein LptE
PMI_RS02130 PMI_RS02130 59.9 Proteus mirabilis HI4320 lptE LPS assembly lipoprotein LptE

Distribution of the homologs in the orthogroup group_1550

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1550

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N756 5.03e-77 231 69 1 172 3 lptE LPS-assembly lipoprotein LptE Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
C6DBW7 6.12e-72 218 59 4 184 3 lptE LPS-assembly lipoprotein LptE Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q6D7L7 1.95e-71 217 61 2 170 3 lptE LPS-assembly lipoprotein LptE Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
B1JGA6 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66DE4 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TNZ8 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pestis (strain Pestoides F)
Q1CKQ5 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pestis bv. Antiqua (strain Nepal516)
A9R6Z1 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pestis bv. Antiqua (strain Angola)
Q7CJV2 5.94e-61 191 57 3 192 1 lptE LPS-assembly lipoprotein LptE Yersinia pestis
B2K885 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C520 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pestis bv. Antiqua (strain Antiqua)
A7FKW1 5.94e-61 191 57 3 192 3 lptE LPS-assembly lipoprotein LptE Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q2NUU8 7.95e-60 187 49 3 179 3 lptE LPS-assembly lipoprotein LptE Sodalis glossinidius (strain morsitans)
A1JQ26 1.15e-59 187 57 2 175 3 lptE LPS-assembly lipoprotein LptE Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A8GB20 2.19e-57 181 55 2 172 3 lptE LPS-assembly lipoprotein LptE Serratia proteamaculans (strain 568)
B5EZ88 1.57e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella agona (strain SL483)
B4TPX4 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella schwarzengrund (strain CVM19633)
B5BCE7 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella paratyphi A (strain AKU_12601)
C0PW77 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella paratyphi C (strain RKS4594)
Q5PM87 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4SYK6 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella newport (strain SL254)
B4TB50 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella heidelberg (strain SL476)
B5R7Z5 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QVP8 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella enteritidis PT4 (strain P125109)
B5FMP3 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella dublin (strain CT_02021853)
Q57RS8 1.89e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella choleraesuis (strain SC-B67)
Q8Z8H6 2.15e-52 169 47 3 178 3 lptE LPS-assembly lipoprotein LptE Salmonella typhi
Q8ZQZ7 2.24e-51 166 46 3 178 1 lptE LPS-assembly lipoprotein LptE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q32IU0 1.83e-47 156 44 3 174 3 lptE LPS-assembly lipoprotein LptE Shigella dysenteriae serotype 1 (strain Sd197)
B7MRS8 4.71e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O81 (strain ED1a)
B7LLH2 5.37e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q83LX4 5.67e-47 155 44 3 174 1 lptE LPS-assembly lipoprotein LptE Shigella flexneri
Q0T6Q1 5.67e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Shigella flexneri serotype 5b (strain 8401)
Q324Q3 5.67e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Shigella boydii serotype 4 (strain Sb227)
Q3Z4F1 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Shigella sonnei (strain Ss046)
B2TU78 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q1RES0 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli (strain UTI89 / UPEC)
B1LL90 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli (strain SMS-3-5 / SECEC)
B6I152 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli (strain SE11)
B7N9P7 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P0ADC1 5.79e-47 155 44 3 174 1 lptE LPS-assembly lipoprotein LptE Escherichia coli (strain K12)
P0ADC2 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TK32 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1A8R6 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O1:K1 / APEC
A7ZXR7 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O9:H4 (strain HS)
C4ZWC8 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli (strain K12 / MC4100 / BW2952)
B7M5G8 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O8 (strain IAI1)
B7L9I5 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli (strain 55989 / EAEC)
B7MFR4 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UKT1 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZJ30 5.79e-47 155 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O139:H28 (strain E24377A / ETEC)
B5YQJ3 2.74e-46 153 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XBN9 2.74e-46 153 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O157:H7
B1IYG7 3.6e-46 153 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B7NM00 3.6e-46 153 44 3 174 3 lptE LPS-assembly lipoprotein LptE Escherichia coli O7:K1 (strain IAI39 / ExPEC)
Q57457 6e-26 100 32 2 152 3 lptE LPS-assembly lipoprotein LptE Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00295
Feature type CDS
Gene lptE
Product LPS assembly lipoprotein LptE
Location 68660 - 69214 (strand: -1)
Length 555 (nucleotides) / 184 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1550
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04390 Lipopolysaccharide-assembly

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2980 Cell wall/membrane/envelope biogenesis (M) M Outer membrane lipoprotein LptE/RlpB (LPS assembly)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03643 LPS-assembly lipoprotein - -

Protein Sequence

MRHRIMTLLLGFAVLVTAGCGFQLRGTTQIPAELQKLQISTGDPYGAQTRAIRQQLRLNNVQIIESGDASIPVLKIISSSEGSEETVSVFQDGKAAEKELVYFLNAQVIMPNGSVYPLSVRVERSFFDNPLEALAKDAEKDMVRDEMREQAAARLIRKLLVIQPSEQQKQHENAQAAEIVTPKA

Flanking regions ( +/- flanking 50bp)

GTCCCGGGTAAATTACTGAACCTGGTTGTAGGTTAATTTAAGGAGATATCGTGCGACATCGCATTATGACGCTGTTGCTCGGGTTTGCGGTGCTGGTCACCGCAGGCTGCGGCTTCCAGCTGCGTGGTACCACGCAAATTCCGGCTGAATTACAGAAACTGCAAATCAGCACCGGTGATCCGTACGGCGCACAGACCCGTGCTATCCGCCAGCAATTACGGTTAAATAACGTGCAGATTATTGAAAGCGGTGACGCATCAATCCCTGTGCTGAAAATTATCAGCTCTTCTGAAGGCTCAGAAGAAACCGTCTCTGTTTTCCAGGATGGTAAAGCCGCTGAAAAAGAACTGGTCTATTTCCTTAATGCCCAGGTCATTATGCCGAACGGCTCAGTGTATCCGCTGAGTGTCCGCGTAGAACGTTCGTTCTTTGATAACCCGCTGGAAGCACTGGCTAAAGATGCGGAAAAAGACATGGTGCGTGACGAAATGCGCGAGCAGGCCGCCGCCCGTCTTATCCGTAAACTTCTGGTGATTCAGCCATCTGAGCAGCAAAAGCAGCATGAAAATGCGCAAGCGGCTGAGATTGTCACACCCAAAGCATGATAAAAGTTTCACCTGAGCAACTCATAACGCAGCTCCGTACGGGGCTGCGT