Homologs in group_1619

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10680 FBDBKF_10680 100.0 Morganella morganii S1 glpD glycerol-3-phosphate dehydrogenase
NLDBIP_14845 NLDBIP_14845 100.0 Morganella morganii S4 glpD glycerol-3-phosphate dehydrogenase
LHKJJB_14500 LHKJJB_14500 100.0 Morganella morganii S3 glpD glycerol-3-phosphate dehydrogenase
HKOGLL_13120 HKOGLL_13120 100.0 Morganella morganii S5 glpD glycerol-3-phosphate dehydrogenase
F4V73_RS14395 F4V73_RS14395 91.3 Morganella psychrotolerans glpD glycerol-3-phosphate dehydrogenase
PMI_RS14485 PMI_RS14485 78.4 Proteus mirabilis HI4320 glpD glycerol-3-phosphate dehydrogenase

Distribution of the homologs in the orthogroup group_1619

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1619

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13035 0.0 736 77 1 490 1 glpD Aerobic glycerol-3-phosphate dehydrogenase Escherichia coli (strain K12)
P52111 0.0 563 59 2 472 3 glpD Glycerol-3-phosphate dehydrogenase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O83004 0.0 555 59 3 483 3 glpD Glycerol-3-phosphate dehydrogenase Pseudomonas tolaasii
Q2YIQ2 2.82e-175 505 51 2 492 1 eryB D-erythritol 1-phosphate dehydrogenase Brucella abortus (strain 2308)
P74257 2.54e-60 210 36 14 499 3 glpD Glycerol-3-phosphate dehydrogenase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P9WN79 9.59e-57 201 36 8 383 1 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WN78 9.59e-57 201 36 8 383 3 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64185 9.59e-57 201 36 8 383 3 glpD2 Glycerol-3-phosphate dehydrogenase 2 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P53435 1.3e-55 198 33 11 473 3 glpD Glycerol-3-phosphate dehydrogenase Mycobacterium leprae (strain TN)
Q4L608 1.7e-51 186 31 14 478 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus haemolyticus (strain JCSC1435)
Q9CG65 8.16e-51 186 27 17 564 3 glpO Alpha-glycerophosphate oxidase Lactococcus lactis subsp. lactis (strain IL1403)
Q49X94 2.69e-49 181 30 15 476 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
P18158 1.78e-48 178 31 15 480 2 glpD Aerobic glycerol-3-phosphate dehydrogenase Bacillus subtilis (strain 168)
Q6GHD4 5.32e-48 177 30 16 479 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MRSA252)
Q2YXR5 8.23e-48 176 30 16 481 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q7A105 9.39e-48 176 30 16 481 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MW2)
Q6G9R2 9.39e-48 176 30 16 481 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain MSSA476)
Q7A5V7 9.39e-48 176 30 16 481 1 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain N315)
Q99UH2 9.39e-48 176 30 16 481 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HGD1 9.39e-48 176 30 16 481 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain COL)
Q2FYZ4 9.39e-48 176 30 16 481 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FHD8 9.39e-48 176 30 16 481 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus aureus (strain USA300)
A7DZP8 1.19e-47 179 30 22 526 1 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Mesocricetus auratus
Q8CPE6 6.96e-47 174 30 13 491 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPP0 6.96e-47 174 30 13 491 3 glpD Aerobic glycerol-3-phosphate dehydrogenase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
A6QLU1 1.22e-46 176 30 22 528 2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Bos taurus
P43304 1.4e-46 176 30 24 530 1 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Homo sapiens
Q8SR40 6.05e-46 172 28 18 513 3 ECU10_0870 Probable glycerol-3-phosphate dehydrogenase Encephalitozoon cuniculi (strain GB-M1)
P35596 1.16e-44 169 30 20 563 3 glpO Alpha-glycerophosphate oxidase Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q9SS48 3.54e-44 167 29 22 537 1 SDP6 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial Arabidopsis thaliana
Q8NZX0 1.57e-43 166 28 20 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q64521 4.69e-43 166 30 22 523 1 Gpd2 Glycerol-3-phosphate dehydrogenase, mitochondrial Mus musculus
Q4R755 6.46e-43 165 30 24 530 2 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial Macaca fascicularis
Q99YI8 1.49e-42 163 28 21 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M1
P0DB21 1.79e-42 162 28 20 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DB20 1.79e-42 162 28 20 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
P35571 2.73e-42 163 30 22 529 1 Gpd2 Glycerol-3-phosphate dehydrogenase, mitochondrial Rattus norvegicus
O86963 2.77e-41 159 26 15 537 1 glpO Alpha-glycerophosphate oxidase Enterococcus casseliflavus
Q5XAK0 5.07e-41 158 27 20 541 3 glpO Alpha-glycerophosphate oxidase Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
O14400 1.18e-39 155 28 19 529 3 gut2 Glycerol-3-phosphate dehydrogenase, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P9WN81 3.06e-37 146 28 16 493 1 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WN80 3.06e-37 146 28 16 493 3 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P64183 3.06e-37 146 28 16 493 3 glpD1 Glycerol-3-phosphate dehydrogenase 1 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P90795 4.05e-37 148 29 23 519 3 gpdh-3 Probable glycerol-3-phosphate dehydrogenase, mitochondrial Caenorhabditis elegans
P32191 3.44e-36 145 26 19 539 1 GUT2 Glycerol-3-phosphate dehydrogenase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q54QC1 8.47e-35 141 28 19 505 3 DDB_G0283951 Probable glycerol-3-phosphate dehydrogenase, mitochondrial Dictyostelium discoideum
P0A9C2 5.37e-19 93 26 18 490 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Shigella flexneri
P0A9C0 5.37e-19 93 26 18 490 1 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Escherichia coli (strain K12)
P0A9C1 5.37e-19 93 26 18 490 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Escherichia coli O157:H7
P43799 3.24e-14 78 24 17 493 3 glpA Anaerobic glycerol-3-phosphate dehydrogenase subunit A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
D4GYI2 2.88e-13 75 25 12 396 1 gpdA1 Anaerobic glycerol-3-phosphate dehydrogenase subunit A1 Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
D4GQU6 4.28e-06 53 25 15 385 1 gpdA2 Anaerobic glycerol-3-phosphate dehydrogenase subunit A2 Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_15015
Feature type CDS
Gene glpD
Product glycerol-3-phosphate dehydrogenase
Location 103828 - 105315 (strand: -1)
Length 1488 (nucleotides) / 495 (amino acids)

Contig

Accession ZDB_225
Length 129223 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1619
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01266 FAD dependent oxidoreductase
PF16901 C-terminal domain of alpha-glycerophosphate oxidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0578 Energy production and conversion (C) C Glycerol-3-phosphate dehydrogenase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Glycerophospholipid metabolism
Biosynthesis of secondary metabolites		 -

Protein Sequence

METKDLIVIGGGINGAGIAADAAGRGLSVLMLEARDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHQPHLRPAWMIRAGLFLYDHLGKRTTLPGSRGLTFSTASPLKAEFKKGFEYSDCWVDDARLVVLNAQEVVRQGGEVRTRTKVTRAWRENGLWQVEAENALTGETLRWQAKGLVNAAGPWVKTFFDDGLQLKSPYGIRLIKGSHIVVPRAHDEPQAYILQNEDHRIVFVIPWMDEFSIIGTTDVEYHGDPADVKIDDNEINYLLDVYNDHFRKTLTRDDIRWTYSGVRPLCDDESDSPQAITRDYTLDLHDDNGQAPLLSVFGGKLTTYRKLGEHALDKLAAYYPHAGKAWTKQAVLTGGELNGRSRDDYARVLTERWSWLPNGLALRLARTYGSQTEKIIGTAQSLSDLGQLFGHNLYEAELRYLVQHEWVITAEDALWRRTKLGMWLTQEEQLQVEQWLRRKEQ

Flanking regions ( +/- flanking 50bp)

ATGAGCGATAACGAACATTAAAGAACAAATGTGGTCATGCGGGAGTGAGGATGGAAACGAAAGATTTGATCGTTATCGGGGGCGGAATCAACGGTGCAGGTATTGCCGCTGATGCAGCCGGACGCGGGCTGTCTGTGCTGATGCTGGAAGCACGGGATCTCGCCTGTGCCACCTCATCGGCCAGCTCAAAACTGATCCACGGCGGATTGCGCTATCTCGAACATTATGAGTTTCGTTTGGTGAGCGAAGCACTGGCTGAACGCGAAGTATTATTAAAAATGGCGCCGCATATCGCCTTCCCGATGCGTTTCCGTCTGCCGCATCAGCCGCACCTGCGCCCGGCGTGGATGATCCGCGCGGGGCTGTTTCTGTATGACCATCTAGGTAAACGCACCACACTGCCGGGCAGCCGCGGCCTGACCTTCAGCACTGCCTCCCCGCTGAAAGCAGAGTTTAAAAAAGGCTTTGAATATTCCGACTGCTGGGTGGACGATGCCCGCCTGGTGGTGCTGAATGCACAGGAAGTCGTGCGTCAGGGCGGCGAAGTCCGCACACGGACAAAAGTCACCCGCGCATGGCGCGAAAACGGTTTATGGCAGGTGGAAGCGGAAAATGCCCTGACCGGCGAAACCCTGCGCTGGCAGGCAAAAGGGCTGGTCAACGCCGCCGGACCGTGGGTAAAAACCTTCTTTGATGACGGATTACAGCTCAAATCCCCTTATGGTATCCGTCTTATCAAAGGCAGCCATATTGTGGTACCGCGCGCTCACGACGAGCCGCAGGCCTATATCCTGCAAAACGAAGATCACCGCATCGTGTTTGTTATCCCGTGGATGGATGAATTTTCGATTATCGGCACGACCGATGTGGAATATCATGGCGATCCGGCAGACGTTAAAATCGATGATAACGAAATTAATTATCTGCTGGATGTGTATAACGACCACTTCCGCAAAACCCTGACCCGCGATGATATCCGCTGGACATACTCCGGTGTGCGTCCGCTGTGTGATGATGAATCGGACTCGCCACAGGCAATCACCCGCGATTACACGCTTGATTTGCATGATGACAACGGACAGGCGCCGCTATTGTCCGTCTTCGGCGGCAAACTCACCACTTACCGCAAGCTGGGCGAACACGCGCTGGATAAACTGGCGGCCTACTATCCGCACGCCGGGAAAGCATGGACAAAACAGGCGGTACTGACCGGCGGTGAACTGAACGGCCGGAGCCGTGACGATTATGCCCGAGTGCTGACAGAACGCTGGTCCTGGCTGCCGAACGGACTGGCGCTGCGCCTGGCCCGCACCTACGGCAGTCAGACAGAAAAAATTATCGGTACTGCGCAATCCCTCAGCGACCTCGGGCAGTTATTCGGCCATAACCTGTATGAAGCCGAGCTGCGCTATCTGGTACAGCACGAGTGGGTGATCACCGCAGAAGATGCGCTCTGGCGCAGAACCAAACTGGGAATGTGGCTCACACAGGAAGAACAGCTGCAGGTGGAGCAGTGGCTCCGCCGGAAAGAGCAATAACGGAAACGAAACAGACCGGCTCAAAAAGCCGGTCTTTTTTTATCGCCTCA