Homologs in group_3304

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10275 FBDBKF_10275 100.0 Morganella morganii S1 hsdM Type I restriction-modification system, DNA methylase subunit
NLDBIP_14440 NLDBIP_14440 100.0 Morganella morganii S4 hsdM Type I restriction-modification system, DNA methylase subunit
LHKJJB_14905 LHKJJB_14905 100.0 Morganella morganii S3 hsdM Type I restriction-modification system, DNA methylase subunit
HKOGLL_13525 HKOGLL_13525 100.0 Morganella morganii S5 hsdM Type I restriction-modification system, DNA methylase subunit

Distribution of the homologs in the orthogroup group_3304

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3304

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47282 0.0 915 94 0 477 3 hsdM Type I restriction enzyme EcoEI methylase subunit Escherichia coli
Q89Z59 8.01e-59 204 33 17 471 1 hsdM Type I restriction enzyme BthVORF4518P methylase subunit Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
P07989 1.5e-41 158 29 15 430 3 hsdM Type I restriction enzyme StySPI methylase subunit Salmonella potsdam
P40813 6.48e-41 156 28 14 430 3 hsdM Type I restriction enzyme StySJI methylase subunit Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P08957 8.03e-40 154 28 14 418 1 hsdM Type I restriction enzyme EcoKI methylase subunit Escherichia coli (strain K12)
Q60297 1.08e-21 101 27 16 396 3 MJECL42 Type I restriction enzyme MjaIX methylase subunit Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q57596 1.48e-19 95 27 11 271 3 MJ0132 Type I restriction enzyme MjaVII methylase subunit Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q47163 4.19e-18 90 26 16 360 3 hsdM Type I restriction enzyme EcoprrI methylase subunit Escherichia coli
P10484 1.4e-17 89 27 18 362 1 hsdM Type I restriction enzyme EcoR124I/EcoR124II methylase subunit Escherichia coli
Q07605 9.11e-17 86 27 9 256 1 bcgIA Type II restriction enzyme and methyltransferase RM.BcgI Heyndrickxia coagulans
Q58617 4.6e-16 84 27 11 274 3 MJ1220 Type I restriction enzyme MjaVIII methylase subunit Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P75436 8.28e-15 80 24 16 372 1 MPN_342 Type I restriction enzyme MpnII methylase subunit Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P50190 1.32e-11 69 28 6 192 3 mamIM Type II methyltransferase M.MamI Microbacterium ammoniaphilum
Q57168 4.83e-10 65 25 10 247 1 hsdM Type I restriction enzyme HindI methylase subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_14610
Feature type CDS
Gene hsdM
Product Type I restriction-modification system, DNA methylase subunit
Location 8174 - 9607 (strand: 1)
Length 1434 (nucleotides) / 477 (amino acids)

Contig

Accession ZDB_225
Length 129223 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3304
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF02384 N-6 DNA Methylase
PF12161 HsdM N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0286 Defense mechanisms (V) V Type I restriction-modification system, DNA methylase subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03427 type I restriction enzyme M protein [EC:2.1.1.72] - -

Protein Sequence

MRKDAGVDGDAQRLGQLSWLLFLKIFDTQEEELELELDDYQFPIPKRYLWRSWAADSEGITGDELLEFVNDDLFPGLKNLIAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFGSSRERHLFGDIYEQILRDLQSAGNAGEFYTPRAVTRFMVNRIDPKLGESIMDPACGTGGFLACAFDHVKEHYVNTTEDHKILQKQICGVEKKQLPHLLCTTNMLLHGIEVPVQIRHDNTLNKPLSSWDEQIDVIVTNPPFGGTEEDGIEKNFPAEMQTRETADLFLQLIIEVLADKGRAAVVLPDGSLFGEGVKTKIKKLLTEECNLHTIVRLPNGVFNPYTGIKTNILFFTKGQPTKEVWFYEHPYPDGVKNYSKTKPMKFEEFQAEIDWWGNEADGFAARKENHQAWKVSINDIIARNFNLDIKNPYQGETISHDPDELLAQYQKQQAEISKLRNQLRDILGAALAGNKDAD

Flanking regions ( +/- flanking 50bp)

GGAAAGAAAACATGTCGATTAGTTCAGTAATTAAATCCCTTCAGGACATTATGCGTAAAGATGCCGGTGTTGACGGTGATGCCCAGCGTTTGGGGCAACTGTCATGGCTGTTGTTCCTGAAAATTTTCGATACCCAAGAAGAAGAGCTGGAACTGGAGCTGGATGATTATCAGTTCCCGATCCCGAAGCGCTATTTATGGCGCAGCTGGGCAGCAGATAGTGAGGGTATTACCGGTGATGAGTTACTGGAGTTTGTGAACGACGATCTTTTTCCGGGGCTTAAAAACCTCATCGCGCCGATCGATAAAAATCCGCGTGGCTTTGTTGTCAGACAGGCGTTCAGCGATGCCTATAACTATATGAAAAATGGCACACTGCTGCGCCAGGTGATTAACAAGCTCAATGAAATTGATTTCGGCAGCAGCCGGGAACGGCATCTGTTTGGCGATATTTACGAACAGATCCTGCGTGACCTGCAAAGTGCAGGAAATGCAGGTGAATTCTATACTCCACGCGCCGTGACGCGCTTTATGGTCAATCGTATTGATCCGAAGCTGGGTGAGTCAATTATGGACCCGGCGTGCGGTACCGGTGGTTTCCTCGCCTGTGCGTTTGACCATGTGAAAGAGCATTACGTCAATACCACCGAAGACCACAAAATACTGCAAAAACAGATCTGCGGCGTAGAGAAAAAGCAGCTTCCGCATTTGCTGTGTACCACCAACATGCTGCTGCACGGCATTGAAGTACCGGTACAAATCCGCCATGACAACACACTCAATAAGCCGCTTTCTTCCTGGGATGAGCAGATTGATGTGATTGTTACCAACCCGCCGTTTGGCGGTACCGAAGAAGACGGTATCGAGAAAAACTTTCCGGCAGAGATGCAGACCCGTGAAACCGCTGATCTGTTTCTGCAACTGATTATCGAAGTGCTGGCAGACAAAGGCCGCGCAGCAGTGGTATTACCGGATGGCTCGCTGTTTGGCGAAGGCGTGAAAACCAAGATTAAAAAACTGCTCACTGAGGAGTGCAATCTGCACACCATCGTGCGGTTGCCAAACGGCGTGTTTAACCCGTACACCGGTATCAAAACTAATATTCTGTTTTTCACCAAAGGTCAGCCAACCAAAGAGGTGTGGTTCTATGAGCACCCGTACCCGGACGGCGTGAAGAACTACAGTAAAACCAAACCGATGAAGTTTGAAGAGTTTCAGGCTGAGATCGATTGGTGGGGAAATGAAGCCGACGGTTTTGCCGCCCGCAAAGAGAACCATCAGGCGTGGAAAGTCAGCATCAACGACATTATCGCCCGCAACTTCAACCTCGACATTAAAAACCCCTATCAGGGCGAAACCATCAGCCACGATCCGGACGAATTGCTGGCGCAGTACCAGAAACAGCAGGCGGAAATCAGCAAACTGCGTAACCAGTTGCGCGATATTCTTGGCGCTGCACTGGCAGGCAATAAGGACGCTGACTGATGACCGTTGAGAAGCTGATTACCGACCATATCGATATCTGGTCTTCTGCC