Homologs in group_974

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05385 FBDBKF_05385 100.0 Morganella morganii S1 abgR HTH-type transcriptional regulator AbgR
NLDBIP_12545 NLDBIP_12545 100.0 Morganella morganii S4 abgR HTH-type transcriptional regulator AbgR
LHKJJB_12405 LHKJJB_12405 100.0 Morganella morganii S3 abgR HTH-type transcriptional regulator AbgR
HKOGLL_11020 HKOGLL_11020 100.0 Morganella morganii S5 abgR HTH-type transcriptional regulator AbgR
F4V73_RS05840 F4V73_RS05840 89.5 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS07240 PMI_RS07240 55.4 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_974

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_974

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DV33 1.63e-07 55 39 0 69 1 admX HTH-type transcriptional regulator AdmX Serratia plymuthica
P77744 1.81e-06 52 29 2 93 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
P52044 3.03e-06 51 30 1 98 3 ygfI Uncharacterized HTH-type transcriptional regulator YgfI Escherichia coli (strain K12)
P42427 4.47e-06 50 35 0 68 3 tfdT HTH-type transcriptional regulator TfdT Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
O35038 5.54e-06 50 36 1 71 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
Q00678 1.78e-05 48 35 0 70 3 nocR Regulatory protein NocR Agrobacterium fabrum (strain C58 / ATCC 33970)
Q05840 1.86e-05 48 35 0 68 3 clcR HTH-type transcriptional regulator ClcR Pseudomonas putida
P77171 1.86e-05 48 37 0 58 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P27111 1.91e-05 48 32 1 83 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
Q8X4M5 2.04e-05 48 32 1 83 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
Q47005 3.02e-05 48 25 1 99 3 nac Nitrogen assimilation regulatory protein nac Escherichia coli (strain K12)
A0R8S0 5.53e-05 47 42 0 61 3 czcR HTH-type transcriptional regulator CzcR Bacillus thuringiensis (strain Al Hakam)
Q81VJ1 5.53e-05 47 42 0 61 3 czcR HTH-type transcriptional regulator CzcR Bacillus anthracis
Q63H01 5.69e-05 47 42 0 61 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ZK / E33L)
Q73EY2 5.69e-05 47 42 0 61 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ATCC 10987 / NRS 248)
Q6HPH4 5.74e-05 47 42 0 61 3 czcR HTH-type transcriptional regulator CzcR Bacillus thuringiensis subsp. konkukian (strain 97-27)
P35112 6.74e-05 47 34 0 70 3 nocR Regulatory protein NocR Agrobacterium tumefaciens (strain T37)
P30864 7.08e-05 47 32 1 84 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
Q81IX0 8.41e-05 47 42 0 61 3 czcR HTH-type transcriptional regulator CzcR Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q08597 8.75e-05 47 25 1 99 3 nac Nitrogen assimilation regulatory protein nac Klebsiella aerogenes
P52665 8.91e-05 45 28 1 91 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes
Q44311 9.86e-05 46 44 0 61 3 soxR HTH-type transcriptional regulator SoxR Arthrobacter sp. (strain TE1826)
Q04778 0.000113 46 38 0 71 3 alsR HTH-type transcriptional regulator AlsR Bacillus subtilis (strain 168)
P0A9F6 0.000125 46 34 0 76 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 0.000125 46 34 0 76 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 0.000125 46 34 0 76 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
P03030 0.000126 46 31 0 66 3 lysR Transcriptional activator protein LysR Escherichia coli (strain K12)
Q9S4Y7 0.00015 46 31 1 99 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 0.00015 46 31 1 99 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57S50 0.000155 46 31 1 99 3 allS HTH-type transcriptional activator AllS Salmonella choleraesuis (strain SC-B67)
P0ACR0 0.000186 45 31 1 96 1 allS HTH-type transcriptional activator AllS Escherichia coli (strain K12)
P0ACR1 0.000186 45 31 1 96 3 allS HTH-type transcriptional activator AllS Escherichia coli O157:H7
P94403 0.000317 45 28 4 111 3 bsdA HTH-type transcriptional regulator BsdA Bacillus subtilis (strain 168)
Q8Z8R3 0.000317 45 31 1 99 3 allS HTH-type transcriptional activator AllS Salmonella typhi
Q46M57 0.000376 45 33 0 68 1 tfdR HTH-type transcriptional regulator TdfR Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q46M54 0.000383 45 33 0 68 1 tfdS HTH-type transcriptional regulator TfdS Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q9JXW7 0.000627 44 32 1 84 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P52686 0.000634 44 37 0 58 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
Q9JPU9 0.000668 44 32 1 84 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
Q1RF30 0.000673 44 30 1 99 3 allS HTH-type transcriptional activator AllS Escherichia coli (strain UTI89 / UPEC)
A1A8H0 0.000673 44 30 1 99 3 allS HTH-type transcriptional activator AllS Escherichia coli O1:K1 / APEC
Q8FK66 0.000679 44 30 1 99 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD7 0.000679 44 30 1 99 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:K15:H31 (strain 536 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_12205
Feature type CDS
Gene abgR
Product HTH-type transcriptional regulator AbgR
Location 95559 - 96422 (strand: 1)
Length 864 (nucleotides) / 287 (amino acids)

Contig

Accession ZDB_221
Length 181491 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_974
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MFFSRKLEAFMAVVEYGSLSKAAKVMNRTTPPVAKSIKDFEISLGKRLFKREKFGMSLTREGMELYNDLKDLYMQEKEITKKHISGTICNKVNIFYDWGKSKYIAALYRTAFKAGIQINIFRFHYDCIDEINDFEGNTLILSSEQVISERFTLLRHLPQGQIGICCRRSLFQDCDNNLQTLLSSCVWLCEPLLYESPLLKTLLLQHGEQSKHEHVHLIDNVNSYLHLLIDGDYLCFIDEHPKTLPYSDELIFLPLSQSEAENHCYLYKSKSHASVLNKIMDCIENMK

Flanking regions ( +/- flanking 50bp)

AATAAGTAATTATTTAACTGATTATTTACTACAGCACAGGAATCGACATTATGTTTTTTTCAAGGAAGTTAGAAGCCTTTATGGCTGTTGTTGAATACGGCTCACTCAGCAAGGCAGCAAAAGTGATGAACAGGACAACCCCGCCGGTGGCGAAGTCTATCAAGGACTTTGAGATCTCGCTGGGTAAGCGTTTATTTAAACGTGAAAAATTTGGTATGAGCCTGACACGGGAAGGGATGGAGTTGTACAATGATCTTAAAGATCTTTATATGCAGGAAAAAGAAATCACCAAAAAACATATCAGCGGAACGATATGTAATAAGGTGAATATATTTTATGACTGGGGGAAAAGTAAATATATTGCGGCACTGTACCGGACGGCATTCAAAGCGGGTATACAAATTAATATATTTCGTTTCCACTATGATTGTATTGATGAAATAAATGATTTTGAGGGCAATACGCTGATACTGTCGTCAGAGCAGGTTATCAGCGAACGTTTTACGCTGCTGCGCCATTTACCGCAGGGACAAATCGGAATTTGCTGCCGTCGTTCACTGTTTCAGGACTGTGATAACAATTTACAGACATTATTATCCTCCTGTGTCTGGTTATGTGAGCCGTTATTATATGAAAGCCCGTTACTCAAAACATTATTGCTGCAGCACGGTGAGCAGAGCAAACATGAACATGTGCATCTGATCGATAATGTGAACAGTTATCTGCATCTGCTGATTGACGGAGATTATCTCTGCTTTATTGACGAACACCCGAAAACGCTGCCGTACAGCGATGAGCTGATTTTTCTGCCGTTATCGCAGAGTGAGGCGGAAAATCATTGTTATCTGTACAAATCGAAATCACACGCGAGTGTGCTGAACAAAATAATGGATTGTATTGAGAATATGAAATAACAGGAGAGAAGAGAGATGGTGGTGGGAGAAGGATTCGAACCTTCGAAGTC