Orthogroup:group_1041


Homologs in group_1041

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05385 FBDBKF_05385 Morganella morganii S1 abgR HTH-type transcriptional regulator AbgR
EHELCC_12205 EHELCC_12205 Morganella morganii S2 abgR HTH-type transcriptional regulator AbgR
NLDBIP_12545 NLDBIP_12545 Morganella morganii S4 abgR HTH-type transcriptional regulator AbgR
LHKJJB_12405 LHKJJB_12405 Morganella morganii S3 abgR HTH-type transcriptional regulator AbgR
HKOGLL_11020 HKOGLL_11020 Morganella morganii S5 abgR HTH-type transcriptional regulator AbgR
F4V73_RS05840 F4V73_RS05840 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS07240 PMI_RS07240 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of group_1041 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1041 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1041

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1041.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 abgR 5
2 - 2

Product

# Product Occurence
1 HTH-type transcriptional regulator AbgR 5
2 LysR family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 7 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 7 Bacterial regulatory helix-turn-helix protein, lysR family

Annotations of the 48 SwissProt hits

Annotation Number of occurrences
Glycine cleavage system transcriptional activator 3
HTH-type transcriptional activator AllS 10
HTH-type transcriptional activator BauR 1
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AdmX 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator BsdA 1
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CrgA 2
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CzcR 6
HTH-type transcriptional regulator SoxR 1
HTH-type transcriptional regulator TdfR 1
HTH-type transcriptional regulator TfdS 1
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator YtlI 1
Nitrogen assimilation regulatory protein nac 2
Octopine catabolism/uptake operon regulatory protein OccR 2
Regulatory protein NocR 2
SDS degradation transcriptional activation protein 1
Transcriptional activator protein LysR 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YgfI 1
Virulence genes transcriptional activator 1

Protein length

Unique protein length 287

Protein length distribution