Homologs in group_2440

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19285 FBDBKF_19285 100.0 Morganella morganii S1 hybD HyaD/HybD family hydrogenase maturation endopeptidase
NLDBIP_07895 NLDBIP_07895 100.0 Morganella morganii S4 hybD HyaD/HybD family hydrogenase maturation endopeptidase
LHKJJB_07430 LHKJJB_07430 100.0 Morganella morganii S3 hybD HyaD/HybD family hydrogenase maturation endopeptidase
HKOGLL_03500 HKOGLL_03500 100.0 Morganella morganii S5 hybD HyaD/HybD family hydrogenase maturation endopeptidase
F4V73_RS12045 F4V73_RS12045 85.4 Morganella psychrotolerans - HyaD/HybD family hydrogenase maturation endopeptidase
PMI_RS00170 PMI_RS00170 58.6 Proteus mirabilis HI4320 - HyaD/HybD family hydrogenase maturation endopeptidase

Distribution of the homologs in the orthogroup group_2440

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2440

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37182 2.5e-90 263 81 0 160 1 hybD Hydrogenase 2 maturation protease Escherichia coli (strain K12)
P40591 1.01e-34 123 45 4 161 3 hoxM Hydrogenase expression/formation protein HoxM Azotobacter vinelandii
Q43954 1.77e-33 120 47 4 161 3 hupM Hydrogenase expression/formation protein HupM Azotobacter chroococcum mcd 1
P27649 1.25e-31 115 44 5 157 3 hupD Hydrogenase expression/formation protein HupD Rhizobium leguminosarum bv. viciae
Q45251 3.08e-31 114 41 5 162 3 hupD Hydrogenase expression/formation protein HupD Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q03004 1.55e-29 110 39 4 163 3 hupD Hydrogenase expression/formation protein HupD Rhodobacter capsulatus
Q56362 3.86e-29 109 38 4 165 3 hupD Hydrogenase expression/formation protein HupD Thiocapsa roseopersicina
P19930 1.24e-26 102 43 3 129 1 hyaD Hydrogenase 1 maturation protease Escherichia coli (strain K12)
P31909 4.54e-25 98 38 4 154 3 hoxM Hydrogenase expression/formation protein HoxM Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q57701 9.98e-12 62 29 6 154 3 MJ0253 Putative hydrogenase maturation protease MJ0253 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P19497 5.44e-09 55 29 7 153 3 frhD Coenzyme F420 hydrogenase subunit delta Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q60339 6.82e-09 55 27 7 160 3 frhD Coenzyme F420 hydrogenase subunit delta Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P31876 2.62e-06 48 24 3 149 3 hydD Protein HydD Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_07570
Feature type CDS
Gene hybD
Product HyaD/HybD family hydrogenase maturation endopeptidase
Location 252603 - 253097 (strand: 1)
Length 495 (nucleotides) / 164 (amino acids)
In genomic island -

Contig

Accession ZDB_216
Length 269970 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2440
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01750 Hydrogenase maturation protease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0680 Energy production and conversion (C) C Ni,Fe-hydrogenase maturation factor

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03605 hydrogenase maturation protease [EC:3.4.23.-] - -

Protein Sequence

MRILVLGVGNILLTDEAIGVHIAEALAERYILPDYVEVMDGGTAGMELLDSMAGRDHLIITDAIVTAKSAPGTIRILRDEEVPALFTNKISPHQLGLSDVLSALRFTGEFPAKLTLVGVVPASLEPDIGLTPQLQAAVEPALQQVLAVLRESGVEAVKKETADV

Flanking regions ( +/- flanking 50bp)

CATATTGTTGATGTTGATGGCCGTGAAACGGTATCAGTGAAGGTGCTGTAATGCGGATTCTGGTATTAGGTGTCGGCAATATTCTGCTGACTGACGAAGCTATCGGTGTGCATATCGCGGAAGCACTGGCGGAGCGCTATATCCTGCCGGATTATGTGGAAGTGATGGACGGCGGCACGGCGGGGATGGAACTGCTCGACAGCATGGCCGGGCGGGATCATCTGATTATCACTGACGCCATTGTGACGGCGAAAAGCGCCCCGGGCACCATCCGCATTCTGCGGGATGAGGAGGTTCCGGCGCTGTTCACTAATAAAATCTCCCCGCATCAGCTGGGGTTATCCGATGTCTTGTCCGCGCTGCGGTTTACCGGGGAATTCCCCGCCAAACTGACGCTGGTGGGCGTGGTTCCGGCCTCGCTGGAGCCGGATATCGGTCTGACCCCGCAACTGCAGGCTGCCGTTGAACCGGCACTGCAGCAGGTGCTGGCTGTACTGCGTGAATCAGGTGTTGAGGCGGTGAAGAAGGAGACGGCAGATGTCTGAGGATATTCAGGGCTTTATGCACAGCCCGGCAGAACAGATCCGCAACGCGT