Homologs in group_2403

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19265 FBDBKF_19265 100.0 Morganella morganii S1 hybO hydrogenase 2 small subunit
NLDBIP_07875 NLDBIP_07875 100.0 Morganella morganii S4 hybO hydrogenase 2 small subunit
LHKJJB_07410 LHKJJB_07410 100.0 Morganella morganii S3 hybO hydrogenase 2 small subunit
HKOGLL_03520 HKOGLL_03520 100.0 Morganella morganii S5 hybO hydrogenase 2 small subunit
F4V73_RS12025 F4V73_RS12025 92.5 Morganella psychrotolerans hybO hydrogenase 2 small subunit
PMI_RS00150 PMI_RS00150 74.3 Proteus mirabilis HI4320 hybO hydrogenase 2 small subunit

Distribution of the homologs in the orthogroup group_2403

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2403

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69741 0.0 598 83 2 377 1 hybO Hydrogenase-2 small chain Escherichia coli (strain K12)
P69742 0.0 598 83 2 377 3 hybO Hydrogenase-2 small chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69743 0.0 598 83 2 377 3 hybO Hydrogenase-2 small chain Escherichia coli O157:H7
P18637 7.03e-91 280 45 2 293 3 hupA Uptake hydrogenase small subunit Rhizobium leguminosarum bv. viciae
P33375 2.32e-88 274 44 1 290 3 hupS Uptake hydrogenase small subunit Alcaligenes hydrogenophilus
P12635 7e-88 272 44 2 296 3 hupA Uptake hydrogenase small subunit Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P31892 7.03e-88 272 43 1 293 1 hoxK Uptake hydrogenase small subunit Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
O33405 1.04e-87 272 44 2 304 1 hoxS Uptake hydrogenase small subunit Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
P31884 2.21e-87 271 49 3 292 1 hydA Quinone-reactive Ni/Fe-hydrogenase small chain Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
P21950 1.43e-86 269 44 1 293 1 hoxK Uptake hydrogenase small subunit Azotobacter vinelandii
Q83RW9 3.6e-86 268 44 2 304 3 hyaA Hydrogenase-1 small chain Shigella flexneri
P69739 4.1e-86 268 44 2 304 1 hyaA Hydrogenase-1 small chain Escherichia coli (strain K12)
P69740 4.1e-86 268 44 2 304 3 hyaA Hydrogenase-1 small chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P17633 1.26e-83 261 42 2 293 3 hupA Uptake hydrogenase small subunit Rubrivivax gelatinosus
Q46045 9.41e-83 259 44 3 301 3 hyaA Hydrogenase-1 small chain Citrobacter freundii
Q06173 1.97e-81 254 44 3 292 1 hynB1 Periplasmic [NiFe] hydrogenase small subunit 1 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P18190 2.69e-80 253 40 4 293 3 hupA Uptake hydrogenase small subunit Azotobacter chroococcum mcd 1
P21853 5.32e-80 251 44 3 296 1 hydA Periplasmic [NiFe] hydrogenase small subunit Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)
P18187 1.41e-79 249 46 4 290 1 hydA Periplasmic [NiFe] hydrogenase small subunit Solidesulfovibrio fructosivorans
P12943 3.69e-79 248 44 4 281 1 hydA Periplasmic [NiFe] hydrogenase small subunit Megalodesulfovibrio gigas
P61429 6.39e-78 246 42 6 303 3 hynB2 Periplasmic [NiFe] hydrogenase small subunit 2 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P15283 1.44e-77 246 41 1 293 3 hupA Uptake hydrogenase small subunit Rhodobacter capsulatus
P13061 6.47e-76 240 42 5 292 1 hydA Periplasmic [NiFe] hydrogenase small subunit Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
P13063 4.28e-53 181 36 9 307 1 None Periplasmic [NiFeSe] hydrogenase small subunit Desulfomicrobium baculatum
Q50225 4.7e-40 149 33 13 324 2 vhtG F420 non-reducing hydrogenase II small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q50248 1.13e-38 145 33 13 324 2 vhoG F420 non-reducing hydrogenase I small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_07550
Feature type CDS
Gene hybO
Product hydrogenase 2 small subunit
Location 247613 - 248746 (strand: 1)
Length 1134 (nucleotides) / 377 (amino acids)

Contig

Accession ZDB_216
Length 269970 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2403
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit
PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1740 Energy production and conversion (C) C Ni,Fe-hydrogenase I small subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06282 hydrogenase small subunit [EC:1.12.99.6] Nitrotoluene degradation
Microbial metabolism in diverse environments
Two-component system		 -

Protein Sequence

MIEDNTFITSDITSEGIDRRSFLKLCAALAATMGLSANASAEIAASVSRKDCPPVIWISAQECTGCTESLLRATHPTIENLILDMISLEYHEVLSAAFGHQAEANKHNAIEKYKGKYVLVVDGSVPLKDDGIYCMIAGEPIADHIRRAAEGAAAIIAIGSCAAWGGVAAAGDNPTGAASLEAVLPGKTVINIPGCPPNPHNFLATVAHIITYGKAPGLDDKNRPLFAYGRLIHEHCERRAHFDAGRFAKAFGDHGHREGWCLYHLGCKGPETHGNCSTLQFCDVGGVWPVAIGHPCYGCNEAGVGFHKGIHQLAGVQNQTPRSEKPDVELKEGGSVSGGAIGLLGGVVGLVAGVSVMAVRELGRQQKKNRSGDPRGE

Flanking regions ( +/- flanking 50bp)

ATAATAACCGGATTATATTAATATTAAATTAACACAATGGAATATAGAGAATGATCGAAGATAATACCTTTATTACTTCTGATATCACTTCTGAGGGTATTGACCGGCGAAGCTTTCTGAAACTCTGTGCGGCCTTAGCGGCCACCATGGGTCTCAGTGCAAATGCATCTGCCGAAATCGCGGCGTCCGTCAGCCGTAAGGATTGTCCCCCCGTCATCTGGATATCTGCACAGGAGTGTACCGGTTGCACTGAGTCCCTGCTCCGGGCGACGCACCCGACCATCGAAAATCTCATCCTTGATATGATTTCGCTGGAGTACCACGAGGTACTCTCGGCGGCATTCGGTCATCAGGCGGAAGCCAACAAGCACAATGCGATTGAGAAATACAAAGGCAAATATGTGCTGGTGGTGGACGGCTCTGTACCGCTGAAGGATGACGGCATTTACTGCATGATTGCCGGCGAGCCGATTGCCGATCATATCCGCCGTGCGGCGGAGGGCGCTGCCGCGATTATTGCCATCGGCTCTTGTGCCGCGTGGGGTGGTGTGGCTGCCGCCGGTGATAACCCGACCGGCGCGGCATCACTGGAAGCGGTTCTGCCGGGCAAAACCGTGATTAATATTCCGGGCTGCCCGCCTAACCCGCATAACTTCCTGGCAACGGTTGCTCACATCATCACTTACGGCAAAGCCCCGGGGCTGGATGATAAAAACCGGCCGCTGTTTGCTTACGGTCGTCTGATCCACGAACACTGCGAGCGCCGCGCTCACTTTGACGCCGGACGTTTTGCCAAAGCATTCGGCGACCACGGTCACCGTGAAGGCTGGTGCCTCTATCACCTCGGCTGCAAAGGACCGGAAACGCACGGCAACTGCTCCACACTGCAGTTCTGTGATGTCGGCGGCGTGTGGCCGGTGGCTATCGGGCATCCCTGCTATGGCTGTAACGAGGCCGGAGTGGGTTTCCACAAAGGGATCCACCAGCTCGCCGGGGTACAGAACCAGACACCGCGTTCTGAAAAACCGGATGTGGAACTGAAAGAGGGCGGTTCGGTATCGGGCGGCGCTATCGGGCTGCTCGGCGGTGTGGTCGGGCTGGTGGCCGGTGTCAGTGTGATGGCTGTCCGTGAACTGGGCCGCCAGCAGAAGAAAAACCGGTCCGGCGATCCGCGGGGAGAGTAACTGTGAACAGGCGTGACTTTATTAAAGTGGCTTCCGGCGGGGCATTACTG