Homologs in group_3240

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04730 FBDBKF_04730 100.0 Morganella morganii S1 - Colicin-E3
NLDBIP_06340 NLDBIP_06340 100.0 Morganella morganii S4 - Colicin-E3
LHKJJB_03220 LHKJJB_03220 100.0 Morganella morganii S3 - Colicin-E3
HKOGLL_06695 HKOGLL_06695 100.0 Morganella morganii S5 - Colicin-E3

Distribution of the homologs in the orthogroup group_3240

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3240

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_06020
Feature type CDS
Gene -
Product Colicin-E3
Location 209035 - 209400 (strand: 1)
Length 366 (nucleotides) / 121 (amino acids)

Contig

Accession ZDB_215
Length 284267 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3240
Orthogroup size 5
N. genomes 5

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Genomic region

Protein Sequence

MSDKHDPSDGTPHIKVTVYSTPCESEEWPSIDNFNVFQYPGRNRPSILKEYLDEARREPERMVYLSSAAAVGRSALIFPVNGTLAATIASWIQSFDFSALLAGLRDTLPLAGRITGIAALL

Flanking regions ( +/- flanking 50bp)

TTACAGACATAGCGAATTAAACGGATTTTTAAATAAAAAAGGAGCTTTTAATGTCAGATAAGCATGACCCTTCAGACGGTACGCCCCATATTAAAGTTACTGTATACAGCACCCCTTGTGAGAGTGAAGAGTGGCCGTCTATTGATAATTTTAACGTATTCCAGTATCCCGGTCGCAACCGCCCGTCCATCCTGAAAGAATATCTCGATGAAGCACGCAGGGAACCGGAGCGGATGGTCTATCTCAGCAGTGCCGCAGCAGTCGGCCGGAGTGCATTAATTTTTCCGGTTAACGGCACTCTGGCCGCAACCATTGCATCCTGGATTCAGTCTTTCGATTTCAGTGCTCTGCTGGCAGGACTGAGAGATACATTACCCCTGGCGGGGCGGATAACCGGTATTGCCGCATTATTGTGACCGACTAAAATGGGGAACGCTGAATTATATCAGGGTGCCGGACCCCTTAT