Homologs in group_890

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04620 FBDBKF_04620 100.0 Morganella morganii S1 cybB Cytochrome b561
NLDBIP_06230 NLDBIP_06230 100.0 Morganella morganii S4 cybB Cytochrome b561
LHKJJB_03110 LHKJJB_03110 100.0 Morganella morganii S3 cybB Cytochrome b561
HKOGLL_06585 HKOGLL_06585 100.0 Morganella morganii S5 cybB Cytochrome b561
F4V73_RS09070 F4V73_RS09070 87.4 Morganella psychrotolerans - cytochrome b
PMI_RS10445 PMI_RS10445 76.0 Proteus mirabilis HI4320 - cytochrome b

Distribution of the homologs in the orthogroup group_890

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_890

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75925 4.66e-78 233 63 0 180 1 yceJ Cytochrome b561 homolog 2 Escherichia coli (strain K12)
P76345 5.56e-08 53 29 5 185 1 yodB Cytochrome b561 homolog 1 Escherichia coli (strain K12)
Q9X6B2 7.66e-05 44 30 3 176 3 cybB Probable superoxide oxidase CybB Yersinia pestis

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_05910
Feature type CDS
Gene cybB
Product Cytochrome b561
Location 182797 - 183348 (strand: -1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession ZDB_215
Length 284267 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_890
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01292 Prokaryotic cytochrome b561

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3038 Energy production and conversion (C) C Cytochrome b561

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12262 superoxide oxidase [EC:1.10.3.17] - -

Protein Sequence

MQWKNSAQRYGHLSVLLHWGVAITVYGMFALGLWMVSLGYYDVWYHRAPEIHKSIGILLFIVLAVRMIWRWLSPPPPALSTYSRFTRISAALAHWLLYGILFAILITGYFISTANGQAISVFGWFDVPATVTDGAEQADTAGTVHLYLAWSVVVLSALHALAALKHHFFDKDATLKRMLGMKP

Flanking regions ( +/- flanking 50bp)

CCGCTGTTACTGAAATGTTATCCGTATGGAACAGCAAAGGGTATTTATCAATGCAATGGAAAAATAGTGCGCAACGGTACGGGCACCTCTCCGTTCTGCTTCACTGGGGCGTGGCAATCACCGTTTACGGGATGTTTGCACTGGGGCTGTGGATGGTTTCGCTGGGTTACTATGATGTCTGGTATCACCGTGCACCGGAGATCCATAAGAGTATCGGGATCCTGCTGTTTATTGTGCTGGCTGTCCGCATGATCTGGCGCTGGCTTTCCCCGCCGCCGCCGGCATTATCCACTTACAGCCGGTTTACCCGCATCAGTGCCGCACTGGCGCACTGGCTGCTGTACGGTATTTTGTTTGCCATTCTGATCACCGGCTATTTTATCTCAACGGCAAATGGTCAGGCGATATCGGTTTTCGGCTGGTTTGATGTACCGGCCACAGTGACAGACGGCGCAGAGCAGGCGGATACCGCCGGTACGGTTCACCTGTACCTTGCCTGGTCGGTTGTTGTGTTATCGGCGCTGCACGCGCTGGCGGCACTGAAACATCATTTCTTTGATAAAGACGCCACATTAAAACGCATGCTGGGCATGAAACCCTGAACGGGCTGCCCGTAATTTTATTATGACGGAGTGAATATGATGCTGAAGAA