Homologs in group_652

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02230 FBDBKF_02230 100.0 Morganella morganii S1 rnd ribonuclease D
NLDBIP_00760 NLDBIP_00760 100.0 Morganella morganii S4 rnd ribonuclease D
LHKJJB_01275 LHKJJB_01275 100.0 Morganella morganii S3 rnd ribonuclease D
HKOGLL_01315 HKOGLL_01315 100.0 Morganella morganii S5 rnd ribonuclease D
F4V73_RS04600 F4V73_RS04600 79.4 Morganella psychrotolerans rnd ribonuclease D
PMI_RS05630 PMI_RS05630 61.6 Proteus mirabilis HI4320 rnd ribonuclease D

Distribution of the homologs in the orthogroup group_652

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_652

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09155 2.24e-169 480 62 0 370 1 rnd Ribonuclease D Escherichia coli (strain K12)
C9XUE4 4.83e-167 474 63 0 362 3 rnd Ribonuclease D Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
A8GFH0 3.51e-156 447 59 0 372 3 rnd Ribonuclease D Serratia proteamaculans (strain 568)
C6C608 1.32e-149 430 56 0 372 3 rnd Ribonuclease D Musicola paradisiaca (strain Ech703)
P44442 2.6e-103 313 40 3 365 3 rnd Ribonuclease D Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0KXU5 5.71e-86 268 41 4 371 3 rnd Ribonuclease D Shewanella sp. (strain ANA-3)
A1SVE6 1.16e-83 262 38 3 366 3 rnd Ribonuclease D Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
A6V8R6 1.52e-69 226 39 6 368 3 rnd Ribonuclease D Pseudomonas aeruginosa (strain PA7)
Q0BVP4 4.69e-52 181 33 10 387 3 rnd Ribonuclease D Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
A5G127 3.06e-47 168 32 9 367 3 rnd Ribonuclease D Acidiphilium cryptum (strain JF-5)
D4Z694 2.33e-46 166 34 4 285 3 rnd Ribonuclease D Sphingobium indicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)
A7HYE5 5.56e-43 157 33 4 292 3 rnd Ribonuclease D Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
Q6AJF4 1.05e-42 155 29 5 364 3 rnd Ribonuclease D Desulfotalea psychrophila (strain LSv54 / DSM 12343)
Q5NPM2 1.04e-41 153 33 6 296 3 rnd Ribonuclease D Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
B8EN54 5.77e-40 149 29 5 361 3 rnd Ribonuclease D Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2)
Q28RA7 4.79e-38 144 35 5 262 3 rnd Ribonuclease D Jannaschia sp. (strain CCS1)
A9H9B7 4.21e-37 141 29 7 364 3 rnd Ribonuclease D Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / CCUG 37298 / CIP 103539 / LMG 7603 / PAl5)
Q6G329 1.23e-36 140 31 2 259 3 rnd Ribonuclease D Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
Q1QLI8 1.85e-36 139 32 3 252 3 rnd Ribonuclease D Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)
Q5GZ75 3.02e-34 133 33 10 363 3 rnd Ribonuclease D Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
Q12149 7.28e-15 79 24 6 309 1 RRP6 Exosome complex exonuclease RRP6 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
A9LLI8 9.63e-13 73 24 7 261 2 RRP6L3 Protein RRP6-like 3 Arabidopsis thaliana
O67779 3.82e-11 68 29 5 170 3 polA DNA polymerase I Aquifex aeolicus (strain VF5)
P56960 8.06e-11 67 25 5 263 1 Exosc10 Exosome complex component 10 Mus musculus
Q10146 2.48e-10 65 23 8 275 1 rrp6 Exosome complex exonuclease rrp6 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9VFF3 2.71e-10 65 24 5 241 1 Rrp6 Exosome complex component 10 homolog Drosophila melanogaster
D4A1X2 2.77e-10 65 25 5 263 1 Exosc10 Exosome complex component 10 Rattus norvegicus
G5EBX6 6.19e-10 64 23 5 260 1 crn-3 Exosome complex component 10 homolog Caenorhabditis elegans
Q01780 1.05e-09 63 26 5 242 1 EXOSC10 Exosome complex component 10 Homo sapiens
A9LLI7 8.84e-08 57 25 7 251 2 RRP6L2 Protein RRP6-like 2 Arabidopsis thaliana
Q0WVE8 1.03e-07 57 24 7 258 2 RRP6L1 Protein RRP6-like 1 Arabidopsis thaliana
Q179T2 1.42e-06 53 26 6 191 1 AAEL005527 Exonuclease mut-7 homolog Aedes aegypti
Q8N9H8 3.14e-05 49 45 0 53 1 EXD3 Exonuclease mut-7 homolog Homo sapiens

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_02700
Feature type CDS
Gene rnd
Product ribonuclease D
Location 525302 - 526447 (strand: 1)
Length 1146 (nucleotides) / 381 (amino acids)

Contig

Accession ZDB_213
Length 680219 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_652
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00570 HRDC domain
PF01612 3'-5' exonuclease
PF21293 Ribonuclease D, C-terminal HRDC domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0349 Translation, ribosomal structure and biogenesis (J) J Ribonuclease D

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03684 ribonuclease D [EC:3.1.13.5] - -

Protein Sequence

MNYQLITSDTHLAAYCGQVTGKPYLALDTEFVRIRTYYPHLGLVQLYDGEHLALVDPLGITDWTPLKTLLTAPDMIKYLHAGSEDIEVFFNSMGCVPQPLVDTQVLAAFTGHPLSCGFATLVETYLGVALDKSESRTDWLARPLTEKQCEYAAADVYYLLPLAEKLTEKVRAAGYLASAEEECAMMAQRRITQTDPAEAYRDFSGAAQLRPQQLACLQKLAQWRLEQARQRDMAVNFVVREEHLWKVARYMPTSLGELDGLGLTGQEIRCHGRRLLALTEESRALNEADYPAPVENVSDHPLYRKTFKTIKARITELSEAEQFSPELLASRRQINQYLNKVWGFKTSSEEPELLNGWRKPLLETALAEVVAGIEVSAVSGE

Flanking regions ( +/- flanking 50bp)

TTCTGTATCACATCACTTAACCACGTCGTCAAAGACTAAGAGAAGTTGTTTTGAATTATCAGTTGATTACCAGCGATACACACCTTGCCGCCTATTGCGGACAGGTTACCGGCAAACCTTATCTTGCTCTGGACACCGAATTTGTCCGGATACGAACCTATTATCCGCATCTCGGTCTGGTTCAGCTTTATGACGGGGAGCATCTCGCACTGGTCGATCCGCTGGGGATCACTGACTGGACACCGCTGAAAACCTTACTGACTGCGCCGGATATGATCAAATATCTCCATGCGGGCAGTGAGGATATCGAAGTCTTTTTCAACAGCATGGGATGTGTGCCGCAGCCGCTGGTGGATACCCAGGTGCTGGCCGCCTTTACCGGGCATCCGCTCTCCTGCGGATTTGCCACGCTGGTGGAAACCTATCTCGGCGTTGCCCTGGATAAAAGTGAATCCCGGACTGACTGGCTGGCACGTCCGCTGACAGAAAAACAGTGTGAATATGCAGCGGCGGATGTGTATTACCTGCTGCCGCTGGCGGAAAAACTGACTGAAAAAGTCCGTGCTGCCGGTTACCTGGCTTCTGCGGAAGAAGAGTGCGCCATGATGGCGCAGCGCCGTATTACCCAGACTGACCCGGCTGAAGCTTACCGCGATTTCAGCGGTGCAGCACAACTTCGTCCGCAGCAACTGGCCTGTTTACAGAAACTGGCGCAATGGCGGCTGGAACAGGCGCGTCAGCGTGATATGGCGGTCAATTTTGTGGTACGTGAAGAACATCTGTGGAAAGTGGCGCGTTATATGCCGACCTCGCTGGGCGAGCTGGACGGACTGGGGCTGACCGGCCAGGAAATCCGCTGTCACGGCAGACGCCTGCTGGCGTTAACGGAAGAAAGCCGTGCACTGAATGAGGCTGATTATCCGGCTCCGGTGGAAAATGTGTCCGATCATCCGTTATACCGCAAAACATTTAAGACGATTAAAGCACGCATTACTGAGCTGAGCGAAGCGGAACAATTCAGTCCGGAGCTGCTGGCATCACGCCGTCAGATTAACCAGTATCTGAATAAAGTGTGGGGATTTAAAACGTCATCCGAAGAGCCGGAACTGCTGAACGGCTGGCGTAAACCATTGCTGGAGACTGCTCTGGCAGAGGTGGTTGCCGGTATTGAGGTCAGTGCTGTCTCCGGGGAATAAACAGCAAAAAACACGGCGGGGTAACCCGCCGTGTTATTATCAGCCACTAA