COG0349


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0349, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribonuclease D
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0349 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_652 FBDBKF_02230 137482 138627 1 rnd ribonuclease D Morganella morganii S1
1 group_652 EHELCC_02700 525302 526447 1 rnd ribonuclease D Morganella morganii S2
2 group_652 NLDBIP_00760 153689 154834 -1 rnd ribonuclease D Morganella morganii S4
3 group_652 LHKJJB_01275 237851 238996 1 rnd ribonuclease D Morganella morganii S3
4 group_652 HKOGLL_01315 243362 244507 1 rnd ribonuclease D Morganella morganii S5
5 group_652 F4V73_RS04600 974258 975409 1 rnd ribonuclease D Morganella psychrotolerans
6 group_652 PMI_RS05630 1228527 1229645 1 rnd ribonuclease D Proteus mirabilis HI4320