VFG001867


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG001867, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein superoxide dismutase
VF ID VF0169
Category Stress survival
Protein ID WP_016357051
Function A cytoplasmic iron superoxide dismutase; important for intracellular survival and transmission
Vf_category_id VFC0282

Occurence in the database

VFG001867 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1024 FBDBKF_05745 151630 152208 1 sodB superoxide dismutase [Fe] Morganella morganii S1
1 group_1024 EHELCC_11845 29286 29864 -1 sodB superoxide dismutase [Fe] Morganella morganii S2
2 group_1024 NLDBIP_12185 29241 29819 -1 sodB superoxide dismutase [Fe] Morganella morganii S4
3 group_1024 LHKJJB_12045 29286 29864 -1 sodB superoxide dismutase [Fe] Morganella morganii S3
4 group_1024 HKOGLL_10660 29286 29864 -1 sodB superoxide dismutase [Fe] Morganella morganii S5
5 group_1024 F4V73_RS03585 765458 766036 -1 sodB superoxide dismutase [Fe] Morganella psychrotolerans
6 group_1024 PMI_RS06750 1473407 1473985 1 sodB superoxide dismutase [Fe] Proteus mirabilis HI4320