VFG000478


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG000478, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein ferric iron uptake transcriptional regulator
VF ID VF0113
Category Regulation
Protein ID NP_459678
Function Repress the expression of iron-regulated genes; also required for acid-induced activation of atr genes
Vf_category_id VFC0301

Occurence in the database

VFG000478 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1533 FBDBKF_09905 76094 76543 1 fur ferric iron uptake transcriptional regulator Morganella morganii S1
1 group_1533 EHELCC_04705 268059 268508 1 fur ferric iron uptake transcriptional regulator Morganella morganii S2
2 group_1533 NLDBIP_04705 267855 268304 1 fur ferric iron uptake transcriptional regulator Morganella morganii S4
3 group_1533 LHKJJB_13925 67074 67523 -1 fur ferric iron uptake transcriptional regulator Morganella morganii S3
4 group_1533 HKOGLL_12610 76875 77324 1 fur ferric iron uptake transcriptional regulator Morganella morganii S5
5 group_1533 F4V73_RS00445 96077 96523 -1 fur ferric iron uptake transcriptional regulator Morganella psychrotolerans
6 group_1533 PMI_RS02675 585792 586238 -1 fur ferric iron uptake transcriptional regulator Proteus mirabilis HI4320