VFG000478
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG000478, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors
within the database. 7 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.
Description
Protein |
ferric iron uptake transcriptional regulator |
VF ID |
VF0113 |
Category |
Regulation |
Protein ID |
NP_459678 |
Function |
Repress the expression of iron-regulated genes; also required for acid-induced activation of atr genes |
Vf_category_id |
VFC0301 |
Occurence in the database
VFG000478 is associated with 7 different proteins (see tab "Protein list" and "Profile") |
The 7 proteins are classified into 1 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1533 |
FBDBKF_09905 |
76094 |
76543 |
1 |
fur |
ferric iron uptake transcriptional regulator |
Morganella morganii S1 |
1 |
group_1533 |
EHELCC_04705 |
268059 |
268508 |
1 |
fur |
ferric iron uptake transcriptional regulator |
Morganella morganii S2 |
2 |
group_1533 |
NLDBIP_04705 |
267855 |
268304 |
1 |
fur |
ferric iron uptake transcriptional regulator |
Morganella morganii S4 |
3 |
group_1533 |
LHKJJB_13925 |
67074 |
67523 |
-1 |
fur |
ferric iron uptake transcriptional regulator |
Morganella morganii S3 |
4 |
group_1533 |
HKOGLL_12610 |
76875 |
77324 |
1 |
fur |
ferric iron uptake transcriptional regulator |
Morganella morganii S5 |
5 |
group_1533 |
F4V73_RS00445 |
96077 |
96523 |
-1 |
fur |
ferric iron uptake transcriptional regulator |
Morganella psychrotolerans |
6 |
group_1533 |
PMI_RS02675 |
585792 |
586238 |
-1 |
fur |
ferric iron uptake transcriptional regulator |
Proteus mirabilis HI4320 |