PF22688


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF22688, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF22688
Description Hda, lid domain

Occurence in the database

PF22688 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2198 FBDBKF_16560 41630 42361 1 hda DnaA inactivator Hda Morganella morganii S1
1 group_2198 EHELCC_08425 158616 159347 1 hda DnaA inactivator Hda Morganella morganii S2
2 group_2198 NLDBIP_08750 158616 159347 1 hda DnaA inactivator Hda Morganella morganii S4
3 group_2198 LHKJJB_05515 97812 98543 -1 hda DnaA inactivator Hda Morganella morganii S3
4 group_2198 HKOGLL_05400 143207 143938 1 hda DnaA inactivator Hda Morganella morganii S5
5 group_2198 F4V73_RS03090 661010 661726 1 hda DnaA inactivator Hda Morganella psychrotolerans
6 group_2198 PMI_RS07655 1669680 1670387 -1 hda DnaA inactivator Hda Proteus mirabilis HI4320