PF22458


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF22458, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF22458
Description Methyltr_RsmF/B-like, ferredoxin-like domain

Occurence in the database

PF22458 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2368 FBDBKF_19090 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S1
1 group_2368 EHELCC_18835 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S2
2 group_2368 NLDBIP_18850 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S4
3 group_2368 LHKJJB_18705 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S3
4 group_2368 HKOGLL_18440 5740 7032 1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella morganii S5
5 group_2368 F4V73_RS19075 23366 24649 -1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Morganella psychrotolerans
6 group_2368 PMI_RS16300 3599012 3600280 -1 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Proteus mirabilis HI4320