PF21987


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21987, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21987
Description YajR YAM domain

Occurence in the database

PF21987 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2100 FBDBKF_15815 12528 13889 -1 araJ putative arabinose efflux permease AraJ, MFS family Morganella morganii S1
1 group_2100 EHELCC_19635 15 161 1 hypothetical protein Morganella morganii S2
2 group_2100 NLDBIP_19640 4531 4677 -1 hypothetical protein Morganella morganii S4
3 group_2100 LHKJJB_19580 15 161 1 hypothetical protein Morganella morganii S3
4 group_2100 HKOGLL_19520 4531 4677 -1 hypothetical protein Morganella morganii S5
5 group_2100 F4V73_RS16495 117787 119148 1 MFS transporter Morganella psychrotolerans
6 group_2100 PMI_RS00495 128911 130281 -1 MFS transporter Proteus mirabilis HI4320